Genomic profile of antibiotic resistant, classical ctxBpositive Vibrio choleraeO1 biotype El Tor isolated in 2003 and 2005 from Puri, India: A retrospective study

Autor: Bhotra, T, Das, MM, Pal, BB, Singh, DV
Zdroj: Indian Journal of Medical Microbiology; October-December 2016, Vol. 34 Issue: 4 p462-470, 9p
Abstrakt: Objectives:To examine eight strains of Vibrio choleraeO1 isolated in 2003 and 2005 from Puri, India, for antibiotic susceptibility, presence of virulence and regulatory genes, cholera toxin (CT) production, CTX arrangement and genomic profiles. Materials and Methods:Bacterial strains were tested for antibiotic susceptibility using disc diffusion assay. Polymerase chain reaction determined the presence of antibiotic resistance, virulence and regulatory genes. To determine the type of cholera toxin subunit B (ctxB), nucleotide sequencing was performed. Southern hybridisation determined the number and arrangement of CTXΦ. Ribotyping and pulsed-field gel electrophoresis (PFGE) were used to determine the genomic profile of isolates. Results:All the eight strains, except one strain, showed resistant to nalidixic acid, sulphamethoxazole, streptomycin and trimethoprim and possessed the sullI, strB, dfrA1and intSXT genes. All the strains carried the toxin-co-regulated pilus pathogenicity island, the CTX genetic element, the repeat in toxin and produced CT. Restriction fragment length polymorphism (RFLP) analysis showed that V. choleraeO1 possess a single copy of the CTX element flanked by tandemly arranged RS element. Nucleotide sequencing of the ctxBgene showed the presence of classical ctxB. RFLP analysis of conserved rRNA gene showed two ribotype patterns. PFGE analysis also showed at least three PFGE patterns, irrespective of year of isolations, indicating the genomic relatedness among them. Conclusion:Overall, these data suggest that classical ctxB-positive V. choleraeO1 El Tor strains that appeared in 2003 continue to cause infection in 2005 in Puri, India, and belong to identical ribotype(s) and/or pulsotype(s). There is need to continuous monitor the emergence of variant of El Tor because it will improve our understanding of the evolution of new clones of variant of V. cholerae.
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