Structural Analysis of a Trimer of β2-Microgloblin Fragment by Molecular Dynamics Simulations

Autor: Nishikawa, Naohiro, Sakae, Yoshitake, Gouda, Takuya, Tsujimura, Yuichiro, Okamoto, Yuko
Zdroj: Biophysical Journal; March 2019, Vol. 116 Issue: 5 p781-790, 10p
Abstrakt: A peptide β2-m21−31, which is a fragment from residue 21 to residue 31 of β2-microgloblin, is experimentally known to self-assemble and form amyloid fibrils. In order to understand the mechanism of amyloid fibril formations, we applied the replica-exchange molecular dynamics method to the system consisting of three fragments of β2-m21−31. From the analyses on the temperature dependence, we found that there is a clear phase transition temperature in which the peptides aggregate with each other. Moreover, we found by the free energy analyses that there are two major stable states: One of them is like amyloid fibrils and the other is amorphous aggregates.
Databáze: Supplemental Index