Molecular biomimetics: GEPIbased biological routes to technology

Autor: Tamerler, Candan, Khatayevich, Dmitriy, Gungormus, Mustafa, Kacar, Turgay, Oren, E. Emre, Hnilova, Marketa, Sarikaya, Mehmet
Zdroj: Peptide Science; 2010, Vol. 94 Issue: 1 p78-94, 17p
Abstrakt: In nature, the viability of biological systems is sustained via specific interactions among the tens of thousands of proteins, the major building blocks of organisms from the simplest singlecelled to the most complex multicellular species. Biomoleculematerial interaction is accomplished with molecular specificity and efficiency leading to the formation of controlled structures and functions at all scales of dimensional hierarchy. Through evolution, Mother Nature developed molecular recognition by successive cycles of mutation and selection. Molecular specificity of probetarget interactions, e.g., ligandreceptor, antigen–antibody, is always based on specific peptide molecular recognition. Using biology as a guide, we can now understand, engineer, and control peptidematerial interactions and exploit them as a new design tool for novel materials and systems. We adapted the protocols of combinatorially designed peptide libraries, via both cell surface or phage display methods; using these we select short peptides with specificity to a variety of practical materials. These genetically engineered peptides for inorganics GEPI are then studied experimentally to establish their binding kinetics and surface stability. The bound peptide structure and conformations are interrogated both experimentally and via modeling, and selfassembly characteristics are tested via atomic force microscopy. We further engineer the peptide binding and assembly characteristics using a computational biomimetics approach where bioinformatics based peptidesequence similarity analysis is developed to design higher generation functionspecific peptides. The molecular biomimetic approach opens up new avenues for the design and utilization of multifunctional molecular systems in a widerange of applications from tissue engineering, disease diagnostics, and therapeutics to various areas of nanotechnology where integration is required among inorganic, organic and biological materials. Here, we describe lessons from biology with examples of proteinmediated functional biological materials, explain how novel peptides can be designed with specific affinity to inorganic solids using evolutionary engineering approaches, give examples of their potential utilizations in technology and medicine, and, finally, provide a summary of challenges and future prospects. © 2010 Wiley Periodicals, Inc. Biopolymers Pept Sci 94:78–94, 2010.This article was originally published online as an accepted preprint. The “Published Online” date corresponds to the preprint version. You can request a copy of the preprint by emailing the Biopolymers editorial office at biopolymerswiley.com
Databáze: Supplemental Index