Crystal structure, Hirshfeld surface analysis, DFT and molecular docking studies of ethyl 5-amino-2-bromoisonicotinate.

Autor: Mahadevaiah, Harish Kumar, Shivanna, Harishkumar, Hanumaiah, Anil Kumar, Chikkegowd, Devarajegowda Hirehalli, Siddagangaiah, Palakshamurthy Bandrehalli
Předmět:
Zdroj: Acta Crystallographica Section E: Crystallographic Communications; Dec2024, Vol. 80 Issue 12, Following p1274-1279, 10p
Abstrakt: In the title compound, C8H9BrN2O2, the C—O—C—C torsion angle between isonicotine and the ethyl group is 180.0 (2)°. Intra­molecular N—H⋯O and C—H⋯O inter­actions consolidate the mol­ecular structure. In the crystal, N—H⋯N inter­action form S(5) zigzag chains along [010]. The most significant contributions to the Hirshfeld surface arise from H⋯H (33.2%), Br⋯H/H⋯Br (20.9%), O⋯H/H⋯O (11.2%), C⋯H/H⋯C (11.1%) and N⋯H/H⋯N (10%) contacts. The topology of the three-dimensional energy frameworks was generated using the B3LYP/6–31 G(d,p) model to calculate the total inter­action energy. The net inter­action energies for the title compound are Eele = 59.2 kJ mol−1, Epol = 15.5 kJ mol−1, Edis = 140.3 kJ mol−1 and Erep = 107.2 kJ mol−1 with a total inter­action energy Etot of 128.8 kJ mol−1. The mol­ecular structure was optimized by density functional theory (DFT) at the B3LYP/6–311+G(d,p) level and the theoretical and experimentally obtained parameters were compared. The frontier mol­ecular orbitals HOMO and LUMO were generated, giving an energy gap ΔE of 4.0931 eV. The MEP was generated to identify active sites in the mol­ecule and mol­ecular docking studies carried out with the title compound (ligand) and the covid-19 main protease PDB ID: 6LU7, revealing a moderate binding affinity of −5.4 kcal mol−1. [ABSTRACT FROM AUTHOR]
Databáze: Complementary Index