GlobeCorr: interactive globe-based visualization for correlation datasets.

Autor: Arab, Mariam, Woods, Nolan, Garlock, Emma S, Winsor, Geoffrey L, Parks, Jaclyn P, Jia, Baofeng, Doiron, Dany, Takaro, Tim K, Brook, Jeffrey R, Brinkman, Fiona S L
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Zdroj: Bioinformatics Advances; 2023, Vol. 3 Issue 1, p1-4, 4p
Abstrakt: Motivation Increasingly complex omics datasets are being generated, along with associated diverse categories of metadata (environmental, clinical, etc.). Looking at the correlation between these variables can be critical to identify potential confounding factors and novel relationships. To date, some correlation globe software has been developed to aid investigations; however, they lack secure, dynamic visualization capability. Results GlobeCorr.ca is a web-based application designed to provide user-friendly, interactive visualization and analysis of correlation datasets. Users load tabular data listing pairwise variables and their correlation values, and GlobeCorr creates a dynamic visualization using ribbons to represent positive and negative correlations, optionally grouped by domain/category (such as microbiome taxa against other metadata). GlobeCorr runs securely (locally on a user's computer) and provides a simple method for users to visualize and summarize complex datasets. This tool is applicable to a wide range of disciplines and domains of interest, including the bioinformatics/microbiome and metadata examples provided within. Availability and Implementation See https://GlobeCorr.ca ; Code provided under an open source MIT license: https://github.com/brinkmanlab/globecorr. [ABSTRACT FROM AUTHOR]
Databáze: Complementary Index
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