A locus at 19q13.31 significantly reduces the ApoE ε4 risk for Alzheimer's Disease in African Ancestry.

Autor: Rajabli, Farid, Beecham, Gary W., Hendrie, Hugh C., Baiyewu, Olusegun, Ogunniyi, Adesola, Gao, Sujuan, Kushch, Nicholas A., Lipkin-Vasquez, Marina, Hamilton-Nelson, Kara L., Young, Juan I., Dykxhoorn, Derek M., Nuytemans, Karen, Kunkle, Brian W., Wang, Liyong, Jin, Fulai, Liu, Xiaoxiao, Feliciano-Astacio, Briseida E., Schellenberg, Gerard D., Dalgard, Clifton L., Griswold, Anthony J.
Předmět:
Zdroj: PLoS Genetics; 7/5/2022, Vol. 18 Issue 7, p1-15, 15p
Abstrakt: African descent populations have a lower Alzheimer disease risk from ApoE ε4 compared to other populations. Ancestry analysis showed that the difference in risk between African and European populations lies in the ancestral genomic background surrounding the ApoE locus (local ancestry). Identifying the mechanism(s) of this protection could lead to greater insight into the etiology of Alzheimer disease and more personalized therapeutic intervention. Our objective is to follow up the local ancestry finding and identify the genetic variants that drive this risk difference and result in a lower risk for developing Alzheimer disease in African ancestry populations. We performed association analyses using a logistic regression model with the ApoE ε4 allele as an interaction term and adjusted for genome-wide ancestry, age, and sex. Discovery analysis included imputed SNP data of 1,850 Alzheimer disease and 4,331 cognitively intact African American individuals. We performed replication analyses on 63 whole genome sequenced Alzheimer disease and 648 cognitively intact Ibadan individuals. Additionally, we reproduced results using whole-genome sequencing of 273 Alzheimer disease and 275 cognitively intact admixed Puerto Rican individuals. A further comparison was done with SNP imputation from an additional 8,463 Alzheimer disease and 11,365 cognitively intact non-Hispanic White individuals. We identified a significant interaction between the ApoE ε4 allele and the SNP rs10423769_A allele, (β = -0.54,SE = 0.12,p-value = 7.50x10-6) in the discovery data set, and replicated this finding in Ibadan (β = -1.32,SE = 0.52,p-value = 1.15x10-2) and Puerto Rican (β = -1.27,SE = 0.64,p-value = 4.91x10-2) individuals. The non-Hispanic Whites analyses showed an interaction trending in the "protective" direction but failing to pass a 0.05 significance threshold (β = -1.51,SE = 0.84,p-value = 7.26x10-2). The presence of the rs10423769_A allele reduces the odds ratio for Alzheimer disease risk from 7.2 for ApoE ε4/ε4 carriers lacking the A allele to 2.1 for ApoE ε4/ε4 carriers with at least one A allele. This locus is located approximately 2 mB upstream of the ApoE locus, in a large cluster of pregnancy specific beta-1 glycoproteins on chromosome 19 and lies within a long noncoding RNA, ENSG00000282943. This study identified a new African-ancestry specific locus that reduces the risk effect of ApoE ε4 for developing Alzheimer disease. The mechanism of the interaction with ApoEε4 is not known but suggests a novel mechanism for reducing the risk for ε4 carriers opening the possibility for potential ancestry-specific therapeutic intervention. Author summary: Strong associations between ApoE ε4 and Alzheimer disease risk have been confirmed worldwide, but there is variability in the effect size across populations. African-descent populations have a lower risk from ApoE ε4 compared to other populations. Studies in admixed populations have shown that the African ancestral background surrounding the ApoE gene reduces the ε4 risk allele effect. Our objective in this study was to identify areas of the genome that interact with ApoE ε4 in African ancestry and result in a lower risk for developing Alzheimer disease. In this study we identify a protective locus for the ApoE ε4 allele that lowers the risk for African carriers of the ApoE ε4 allele to get Alzheimer disease from an odds ratio of 7.2 to 2.1. This protective haplotype has a frequency of 12% in the African ancestry, but only 0.003 in Europeans. This has been replicated in three independent African ancestry datasets and is trending in a much larger European dataset. [ABSTRACT FROM AUTHOR]
Databáze: Complementary Index
Externí odkaz:
Nepřihlášeným uživatelům se plný text nezobrazuje