Structural characterization of an intramolecular RNA triple helix by NMR spectroscopy.

Autor: Klinck, Roscoe, Liquier, Jean, Taillandier, Eliane, Gouyette, Catherine, Huynh-Dinh, Tam, Guittet, Eric
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Zdroj: European Journal of Biochemistry; 10/15/95, Vol. 233 Issue 2, p544-553, 10p
Abstrakt: A chemically synthesized 29-base RNA oligomer, designed to fold to form an intramolecular triple helix at acid pH, has been studied by NMR spectroscopy. The molecule consisted of seven U·A·U or C+·G·C base triples joined by two pyrimidine telra-loops. The fold was such that the third strand was Hoogsteen base-paired in the major groove of a Watson-Crick paired double helix. The nature and size of the molecule required the use of an assignment strategy using two- and three-dimensional homonuclear methods, complemented by a natural abundance 13C correlation experiment. The assignment of the majority of the exchangeable and non-exchangeable resonances is presented. The data suggest a C3′-endo sugar puckering for all the nucleotides involved in base triples. A preliminary structural model consistent with the NMR data is presented. [ABSTRACT FROM AUTHOR]
Databáze: Complementary Index