Nutritional niches of potentially endemic, facultatively anaerobic heterotrophs from an isolated Antarctic terrestrial hydrothermal refugium elucidated through metagenomics.

Autor: Herbold CW; Te Aka Mātuatua - School of Science, Te Whare Wānanga O Waikato - University of Waikato, Private Bag 3105, Kirikiriroa - Hamilton, 3240, New Zealand.; International Centre for Terrestrial Antarctic Research, Te Whare Wānanga O Waikato - University of Waikato, Kirikiriroa - Hamilton, New Zealand.; Te Kura Pūtaiao Koiora - School of Biological Sciences, Te Whare Wānanga O Waitaha - University of Canterbury, Ōtautahi - Christchurch, New Zealand., Noell SE; Te Aka Mātuatua - School of Science, Te Whare Wānanga O Waikato - University of Waikato, Private Bag 3105, Kirikiriroa - Hamilton, 3240, New Zealand.; International Centre for Terrestrial Antarctic Research, Te Whare Wānanga O Waikato - University of Waikato, Kirikiriroa - Hamilton, New Zealand., Lee CK; Te Aka Mātuatua - School of Science, Te Whare Wānanga O Waikato - University of Waikato, Private Bag 3105, Kirikiriroa - Hamilton, 3240, New Zealand.; International Centre for Terrestrial Antarctic Research, Te Whare Wānanga O Waikato - University of Waikato, Kirikiriroa - Hamilton, New Zealand., Vickers CJ; Te Aka Mātuatua - School of Science, Te Whare Wānanga O Waikato - University of Waikato, Private Bag 3105, Kirikiriroa - Hamilton, 3240, New Zealand., Stott MB; Te Kura Pūtaiao Koiora - School of Biological Sciences, Te Whare Wānanga O Waitaha - University of Canterbury, Ōtautahi - Christchurch, New Zealand., Eisen JA; Genome Center, University of California-Davis, Davis, CA, USA., McDonald IR; Te Aka Mātuatua - School of Science, Te Whare Wānanga O Waikato - University of Waikato, Private Bag 3105, Kirikiriroa - Hamilton, 3240, New Zealand. ian.mcdonald@waikato.ac.nz.; International Centre for Terrestrial Antarctic Research, Te Whare Wānanga O Waikato - University of Waikato, Kirikiriroa - Hamilton, New Zealand. ian.mcdonald@waikato.ac.nz., Cary SC; Te Aka Mātuatua - School of Science, Te Whare Wānanga O Waikato - University of Waikato, Private Bag 3105, Kirikiriroa - Hamilton, 3240, New Zealand.; International Centre for Terrestrial Antarctic Research, Te Whare Wānanga O Waikato - University of Waikato, Kirikiriroa - Hamilton, New Zealand.
Jazyk: angličtina
Zdroj: Environmental microbiome [Environ Microbiome] 2024 Dec 18; Vol. 19 (1), pp. 104. Date of Electronic Publication: 2024 Dec 18.
DOI: 10.1186/s40793-024-00655-5
Abstrakt: Background: Tramway Ridge, a geothermal Antarctic Specially Protected Area (elevation 3340 m) located near the summit of Mount Erebus, is home to a unique community composed of cosmopolitan surface-associated micro-organisms and abundant, poorly understood subsurface-associated microorganisms. Here, we use shotgun metagenomics to compare the functional capabilities of this community to those found elsewhere on Earth and to infer in situ diversity and metabolic capabilities of abundant subsurface taxa.
Results: We found that the functional potential in this community is most similar to that found in terrestrial hydrothermal environments (hot springs, sediments) and that the two dominant organisms in the subsurface carry high rates of in situ diversity which was taken as evidence of potential endemicity. They were found to be facultative anaerobic heterotrophs that likely share a pool of nitrogenous organic compounds while specializing in different carbon compounds.
Conclusions: Metagenomic insights have provided a detailed understanding of the microbe-based ecosystem found in geothermally heated fumaroles at Tramway Ridge. This approach enabled us to compare Tramway Ridge with other microbial systems, identify potentially endemic taxa and elucidate the key metabolic pathways that may enable specific organisms to dominate the ecosystem.
Competing Interests: Declarations. Ethics approval and consent to participate: Not applicable. Consent for publication: Not applicable. Competing interests: The authors declare no competing interests.
(© 2024. The Author(s).)
Databáze: MEDLINE
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