Comprehensive analysis of the genetic variation dataset among wild soybean (Glycine soja) in Shandong Province, China.

Autor: Li LL; National Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China., Tian RM; National Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China., Pu YY; National Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China., Cong YZ; National Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China., Chen X; Weifang Academy of Agricultural Sciences, Weifang, 261017, China., Jia KH; National Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China. kaihuajia_saas@163.com., Li NN; National Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China. qyz1127@163.com.
Jazyk: angličtina
Zdroj: BMC genomic data [BMC Genom Data] 2024 Nov 11; Vol. 25 (1), pp. 97. Date of Electronic Publication: 2024 Nov 11.
DOI: 10.1186/s12863-024-01280-4
Abstrakt: Objectives: Wild soybean (Glycine soja), the ancestor of domesticated soybean, retains a higher level of genetic diversity and adaptability to harsh environments, making it highly valuable for breeding. Here, we re-sequenced 69 wild soybean individuals collected by the Shandong Academy of Agricultural Sciences and identified 1,613,162 high-quality SNPs which not only enriches our understanding of the genetic structure of wild soybean, but also provides valuable resources for further genomic research and genetic improvement of soybean.
Data Description: In this study, we collected 69 wild soybean accessions from Shandong Province, China, and performed re-sequencing on the DNBSEQ platform, followed by SNPs identification. We then integrated ADMIXTURE, neighbor-joining tree, and principal component analysis to illustrate population characteristics. The results showed that these wild soybean accessions could be divided into three distinct subpopulations, exhibiting significant genetic differences.
Competing Interests: Declarations Ethics approval and consent to participate Not applicable. Consent for publication Not applicable. Competing interests The authors declare no competing interests.
(© 2024. The Author(s).)
Databáze: MEDLINE
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