Lamination-based organoid spatially resolved transcriptomics technique for primary lung and liver organoid characterization.

Autor:	Ma S; Tsinghua Shenzhen International Graduate School and Tsinghua-Berkeley Shenzhen Institute, Tsinghua University, Shenzhen 518055, China., Wang W; Tsinghua Shenzhen International Graduate School and Tsinghua-Berkeley Shenzhen Institute, Tsinghua University, Shenzhen 518055, China., Zhou J; Tsinghua Shenzhen International Graduate School and Tsinghua-Berkeley Shenzhen Institute, Tsinghua University, Shenzhen 518055, China., Liao S; The Beijing Genomics Institute Research, Shenzhen 518083, China.; BGI Research, Sanya 572025, China., Hai C; Tsinghua Shenzhen International Graduate School and Tsinghua-Berkeley Shenzhen Institute, Tsinghua University, Shenzhen 518055, China., Hou Y; Tsinghua Shenzhen International Graduate School and Tsinghua-Berkeley Shenzhen Institute, Tsinghua University, Shenzhen 518055, China., Zhou Z; The Beijing Genomics Institute Research, Shenzhen 518083, China., Wang Z; Tsinghua Shenzhen International Graduate School and Tsinghua-Berkeley Shenzhen Institute, Tsinghua University, Shenzhen 518055, China., Su Y; Synorg Biotechnology (Shenzhen) Co. Ltd., Shenzhen 518107, China., Zhu Y; Tsinghua Shenzhen International Graduate School and Tsinghua-Berkeley Shenzhen Institute, Tsinghua University, Shenzhen 518055, China., Dai X; Tsinghua Shenzhen International Graduate School and Tsinghua-Berkeley Shenzhen Institute, Tsinghua University, Shenzhen 518055, China., Zhao Y; The Beijing Genomics Institute Research, Shenzhen 518083, China., Liao S; The Beijing Genomics Institute Research, Shenzhen 518083, China., Cai Y; Synorg Biotechnology (Shenzhen) Co. Ltd., Shenzhen 518107, China., Xu X; The Beijing Genomics Institute Research, Shenzhen 518083, China.
Jazyk:	angličtina
Zdroj:	Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Nov 12; Vol. 121 (46), pp. e2408939121. Date of Electronic Publication: 2024 Nov 08.
DOI:	10.1073/pnas.2408939121
Abstrakt:	Spatial-transcriptomics technologies have demonstrated exceptional performance in characterizing brain and visceral organ tissues, as well as brain and retinal organoids. However, it has not yet been proven whether spatial transcriptomics can effectively characterize primary tissue-derived organoids, as the standardized tissue sectioning or slicing methods are not applicable for such organoids. Herein, we present a technique, lamination-based organoid spatially resolved transcriptomics (LOSRT), for organoid-spatially resolved transcriptomics based on organoid lamination. Primary mouse lung and liver-derived organoids were used in this study. The organoids were formulated using the droplet-engineering method and laminated using a homemade device with weight compression. This technique preserved most cells in individual organoids while maintaining delicate epithelium structures in laminated domains that can be recognized through visual segmentation. The mouse lung and liver organoids were resolved comprising various cell types, including alveolar cells, damage-associated transient progenitor cells, basal cells, macrophages, endothelial cells, fibroblasts, hepatocytes, and hepatic stellate cells. The distribution and count of cells were confirmed using immunohistology and identified with spatial transcriptomic features. This study reports an automated and integrated spatial transcriptomics method for primary organoids. It has the potential to standardize and rapidly characterize primary tissue-derived organoids. Competing Interests: Competing interests statement:The authors declare no competing interest.
Databáze:	MEDLINE
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