Community standards and future opportunities for synthetic communities in plant-microbiota research.

Autor: Northen TR; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. TRNorthen@lbl.gov.; DOE Joint Genome Institute, Berkeley, CA, USA. TRNorthen@lbl.gov., Kleiner M; Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA., Torres M; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Kovács ÁT; Institute of Biology, Leiden University, Leiden, The Netherlands.; DTU Bioengineering, Technical University of Denmark, Kongens Lyngby, Denmark., Nicolaisen MH; Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark., Krzyżanowska DM; Intercollegiate Faculty of Biotechnology UG&MUG, University of Gdańsk, Gdańsk, Poland., Sharma S; Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi, India., Lund G; Sustainable Soils and Crops, Rothamsted Research, Harpenden, UK., Jelsbak L; DTU Bioengineering, Technical University of Denmark, Kongens Lyngby, Denmark., Baars O; Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, USA., Kindtler NL; Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark., Wippel K; Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam, The Netherlands., Dinesen C; Institute of Biology, Leiden University, Leiden, The Netherlands.; DTU Bioengineering, Technical University of Denmark, Kongens Lyngby, Denmark., Ferrarezi JA; Department of Genetics, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, Brazil., Marian M; Center for Agriculture Food Environment, University of Trento, San Michele all'Adige, Trento, Italy., Pioppi A; Institute of Biology, Leiden University, Leiden, The Netherlands.; DTU Bioengineering, Technical University of Denmark, Kongens Lyngby, Denmark., Xu X; Institute of Biology, Leiden University, Leiden, The Netherlands., Andersen T; Max Planck Institute for Plant Breeding Research, Cologne, Germany.; Cluster of Excellence on Plant Sciences (CEPLAS), Düsseldorf, Germany., Geldner N; Department of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland., Schulze-Lefert P; Max Planck Institute for Plant Breeding Research, Cologne, Germany.; Cluster of Excellence on Plant Sciences (CEPLAS), Düsseldorf, Germany., Vorholt JA; Institute of Microbiology, ETH Zurich, Zurich, Switzerland., Garrido-Oter R; Max Planck Institute for Plant Breeding Research, Cologne, Germany. garridoo@mpipz.mpg.de.; Cluster of Excellence on Plant Sciences (CEPLAS), Düsseldorf, Germany. garridoo@mpipz.mpg.de.; Earlham Institute, Norwich Research Park, Norwich, UK. garridoo@mpipz.mpg.de.
Jazyk: angličtina
Zdroj: Nature microbiology [Nat Microbiol] 2024 Nov; Vol. 9 (11), pp. 2774-2784. Date of Electronic Publication: 2024 Oct 30.
DOI: 10.1038/s41564-024-01833-4
Abstrakt: Harnessing beneficial microorganisms is seen as a promising approach to enhance sustainable agriculture production. Synthetic communities (SynComs) are increasingly being used to study relevant microbial activities and interactions with the plant host. Yet, the lack of community standards limits the efficiency and progress in this important area of research. To address this gap, we recommend three actions: (1) defining reference SynComs; (2) establishing community standards, protocols and benchmark data for constructing and using SynComs; and (3) creating an infrastructure for sharing strains and data. We also outline opportunities to develop SynCom research through technical advances, linking to field studies, and filling taxonomic blind spots to move towards fully representative SynComs.
(© 2024. Springer Nature Limited.)
Databáze: MEDLINE
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