The genetic architecture of repeated local adaptation to climate in distantly related plants.

Autor: Whiting JR; Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada. jwhiting2315@gmail.com., Booker TR; Department of Zoology, Faculty of Science, University of British Columbia, Vancouver, British Colombia, Canada.; Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, British Columbia, Canada., Rougeux C; Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada., Lind BM; Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.; Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, British Columbia, Canada., Singh P; Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.; Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland.; EAWAG, Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland., Lu M; Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA., Huang K; Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, British Columbia, Canada., Whitlock MC; Department of Zoology, Faculty of Science, University of British Columbia, Vancouver, British Colombia, Canada., Aitken SN; Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, British Columbia, Canada., Andrew RL; School of Environmental and Rural Science, University of New England, Armidale, New South Wales, Australia., Borevitz JO; Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia., Bruhl JJ; School of Environmental and Rural Science, University of New England, Armidale, New South Wales, Australia., Collins TL; Department of Planning and Environment, Queanbeyan, New South Wales, Australia.; Department of Climate Change, Energy, the Environment and Water, Queanbeyan, New South Wales, Australia., Fischer MC; ETH Zurich: Institute of Integrative Biology (IBZ), ETH Zurich, Zurich, Switzerland., Hodgins KA; School of Biological Sciences, Monash University, Melbourne, Victoria, Australia., Holliday JA; Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA, USA., Ingvarsson PK; Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala, Sweden., Janes JK; Biology Department, Vancouver Island University, Nanaimo, British Columbia, Canada.; Department of Ecosystem Science and Management, University of Northern British Columbia, Prince George, British Columbia, Canada.; Species Survival Commission, Orchid Specialist Group, IUCN North America, Washington, DC, USA., Khandaker M; School of Environmental and Rural Science, University of New England, Armidale, New South Wales, Australia., Koenig D; Department of Botany and Plant Sciences, University of California, Riverside, CA, USA.; Institute for Integrative Genome Biology, University of California, Riverside, CA, USA., Kreiner JM; Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, British Columbia, Canada.; Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada., Kremer A; UMR BIOGECO, INRAE, Université de Bordeaux; 69 Route d'Arcachon, Cestas, France., Lascoux M; Program in Plant Ecology and Evolution, Department of Ecology and Genetics, Evolutionary Biology Centre and Science for Life Laboratory, Uppsala University, Uppsala, Sweden., Leroy T; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Milesi P; Program in Plant Ecology and Evolution, Department of Ecology and Genetics, Evolutionary Biology Centre and Science for Life Laboratory, Uppsala University, Uppsala, Sweden., Murray KD; Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia.; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany., Pyhäjärvi T; Department of Forest Sciences, University of Helsinki, Helsinki, Finland.; Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland., Rellstab C; Swiss Federal Research Institute WSL, Birmensdorf, Switzerland., Rieseberg LH; Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, British Columbia, Canada., Roux F; Laboratoire des Interactions Plantes-Microbes-Environnement, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, CNRS, Université de Toulouse, Castanet-Tolosan, France., Stinchcombe JR; Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada., Telford IRH; School of Environmental and Rural Science, University of New England, Armidale, New South Wales, Australia., Todesco M; Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, British Columbia, Canada.; Michael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada.; Department of Biology, University of British Columbia, Kelowna, British Columbia, Canada., Tyrmi JS; Department of Ecology and Genetics, University of Oulu, Oulu, Finland., Wang B; South China National Botanical Garden, Guangzhou, China., Weigel D; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany., Willi Y; Department of Environmental Sciences, University of Basel, Basel, Switzerland., Wright SI; Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada., Zhou L; Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA, USA., Yeaman S; Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada. Samuel.yeaman@ucalgary.ca.
Jazyk: angličtina
Zdroj: Nature ecology & evolution [Nat Ecol Evol] 2024 Oct; Vol. 8 (10), pp. 1933-1947. Date of Electronic Publication: 2024 Aug 26.
DOI: 10.1038/s41559-024-02514-5
Abstrakt: Closely related species often use the same genes to adapt to similar environments. However, we know little about why such genes possess increased adaptive potential and whether this is conserved across deeper evolutionary lineages. Adaptation to climate presents a natural laboratory to test these ideas, as even distantly related species must contend with similar stresses. Here, we re-analyse genomic data from thousands of individuals from 25 plant species as diverged as lodgepole pine and Arabidopsis (~300 Myr). We test for genetic repeatability based on within-species associations between allele frequencies in genes and variation in 21 climate variables. Our results demonstrate significant statistical evidence for genetic repeatability across deep time that is not expected under randomness, identifying a suite of 108 gene families (orthogroups) and gene functions that repeatedly drive local adaptation to climate. This set includes many orthogroups with well-known functions in abiotic stress response. Using gene co-expression networks to quantify pleiotropy, we find that orthogroups with stronger evidence for repeatability exhibit greater network centrality and broader expression across tissues (higher pleiotropy), contrary to the 'cost of complexity' theory. These gene families may be important in helping wild and crop species cope with future climate change, representing important candidates for future study.
(© 2024. The Author(s).)
Databáze: MEDLINE
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