A Method for Inferring Polymers Based on Linear Regression and Integer Programming.

Autor: Ido R, Cao S, Zhu J, Azam NA, Haraguchi K, Zhao L, Nagamochi H, Akutsu T
Jazyk: angličtina
Zdroj: IEEE/ACM transactions on computational biology and bioinformatics [IEEE/ACM Trans Comput Biol Bioinform] 2024 Aug 22; Vol. PP. Date of Electronic Publication: 2024 Aug 22.
DOI: 10.1109/TCBB.2024.3447780
Abstrakt: A novel framework has recently been proposed for designing the molecular structure of chemical compounds with a desired chemical property using both artificial neural networks and mixed integer linear programming. In this paper, we design a new method for inferring a polymer based on the framework. For this, we introduce a new way of representing a polymer as a form of monomer and define new descriptors that feature the structure of polymers. We also use linear regression as a building block of constructing a prediction function in the framework. The results of our computational experiments reveal a set of chemical properties on polymers to which a prediction function constructed with linear regression performs well. We also observe that the proposed method can infer polymers with up to 50 nonhydrogen atoms in a monomer form.
Databáze: MEDLINE