Setting Up the JBrowse 2 Genome Browser.

Autor: Diesh C; Department of Bioengineering, University of California, Berkeley, California., Buels R; Department of Bioengineering, University of California, Berkeley, California., Stevens G; Department of Bioengineering, University of California, Berkeley, California., Bridge C; Ontario Institute for Cancer Research, Toronto, Ontario, Canada., Cain S; Ontario Institute for Cancer Research, Toronto, Ontario, Canada., Stein L; Ontario Institute for Cancer Research, Toronto, Ontario, Canada., Holmes I; Department of Bioengineering, University of California, Berkeley, California.
Jazyk: angličtina
Zdroj: Current protocols [Curr Protoc] 2024 Aug; Vol. 4 (8), pp. e1120.
DOI: 10.1002/cpz1.1120
Abstrakt: JBrowse 2 is a modular genome browser that can visualize many common genomic file formats. While JBrowse 2 supports a variety of different usages, it is particularly suited for deployment on websites, such as model organism databases or other web-based genomic data resources. This protocol provides detailed instructions for setting up JBrowse 2 on an Ubuntu Linux web server, loading a reference genome from a FASTA format file, and adding a gene annotation track from a GFF3 format file. By the end of the protocol, users will have a working JBrowse 2 instance that is accessible via the web. © 2024 The Author(s). Current Protocols published by Wiley Periodicals LLC. Basic Protocol: Setting up JBrowse 2 on your web server.
(© 2024 The Author(s). Current Protocols published by Wiley Periodicals LLC.)
Databáze: MEDLINE
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