Assembly and comparative genome analysis of four mitochondrial genomes from Saccharum complex species.

Autor:	Li S; Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Sugarcane Genetic Improvement/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture & Rural Affairs, Nanning, China.; State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning, China., Yang C; Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Sugarcane Genetic Improvement/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture & Rural Affairs, Nanning, China., Wang Z; State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning, China.; Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning, China., Xu C; National Key Laboratory for Biological Breeding of Tropical Crops, Sugarcane Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China., Zhang G; Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Sugarcane Genetic Improvement/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture & Rural Affairs, Nanning, China., Huang Y; Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Sugarcane Genetic Improvement/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture & Rural Affairs, Nanning, China., Zhang B; Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Sugarcane Genetic Improvement/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture & Rural Affairs, Nanning, China., Zhou S; Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Sugarcane Genetic Improvement/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture & Rural Affairs, Nanning, China., Gao Y; Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Sugarcane Genetic Improvement/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture & Rural Affairs, Nanning, China., Zong W; Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Sugarcane Genetic Improvement/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture & Rural Affairs, Nanning, China., Duan W; Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Sugarcane Genetic Improvement/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture & Rural Affairs, Nanning, China., Yang X; State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning, China.; Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning, China.
Jazyk:	angličtina
Zdroj:	Frontiers in plant science [Front Plant Sci] 2024 Jul 19; Vol. 15, pp. 1421170. Date of Electronic Publication: 2024 Jul 19 (Print Publication: 2024).
DOI:	10.3389/fpls.2024.1421170
Abstrakt:	Saccharum complex includes genera Saccharum , Miscanthus , Erianthus , Narenga , and Tripidium . Since the Saccharum complex/Saccharinae constitutes the gene pool used by sugarcane breeders to introduce useful traits into sugarcane, studying the genomic characterization of the Saccharum complex has become particularly important. Here, we assembled graph-based mitochondrial genomes (mitogenomes) of four Saccharinae species ( T. arundinaceum , E. rockii, M. sinensis , and N. porphyrocoma ) using Illumina and PacBio sequencing data. The total lengths of the mitogenomes of T. arundinaceum , M. sinensis , E. rockii and N. porphyrocoma were 549,593 bp, 514,248 bp, 481,576 bp and 513,095 bp, respectively. Then, we performed a comparative mitogenomes analysis of Saccharinae species, including characterization, organelles transfer sequence, collinear sequence, phylogenetics analysis, and gene duplicated/loss. Our results provided the mitogenomes of four species closely related to sugarcane breeding, enriching the mitochondrial genomic resources of the Saccharinae. Additionally, our study offered new insights into the evolution of mitogenomes at the family and genus levels and enhanced our understanding of organelle evolution in the highly polyploid Saccharum genus. Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. (Copyright © 2024 Li, Yang, Wang, Xu, Zhang, Huang, Zhang, Zhou, Gao, Zong, Duan and Yang.)
Databáze:	MEDLINE
Externí odkaz:	Zobrazit plný text záznamu