Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA.

Autor: Ovaskainen O; Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland. otso.t.ovaskainen@jyu.fi.; Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland. otso.t.ovaskainen@jyu.fi.; Department of Biology, Centre for Biodiversity Dynamics, Norwegian University of Science and Technology, Trondheim, N-7491, Norway. otso.t.ovaskainen@jyu.fi., Abrego N; Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland.; Department of Agricultural Sciences, University of Helsinki, P.O. Box 27, FI-00014, Helsinki, Finland., Furneaux B; Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland., Hardwick B; Department of Agricultural Sciences, University of Helsinki, P.O. Box 27, FI-00014, Helsinki, Finland., Somervuo P; Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland., Palorinne I; Department of Agricultural Sciences, University of Helsinki, P.O. Box 27, FI-00014, Helsinki, Finland., Andrew NR; Natural History Museum, Zoology, University of New England, Armidale, NSW, 2351, Australia.; Faculty of Science and Engineering, Southern Cross University, Northern Rivers, NSW, 2480, Australia., Babiy UV; Wrangel Island State Nature Reserve, Pevek, Russia., Bao T; Department of Biological Sciences, MacEwan University, 10, 700 - 104 Avenue, Edmonton, AB, T5J 2P2, Canada., Bazzano G; Universidad Nacional de Còrdoba, Facultad de Ciencias Exactas Físicas y Naturales, Centro de Zoología Aplicada, Córdoba, Argentina., Bondarchuk SN; Sikhote-Alin State Nature Biosphere Reserve named after K. G. Abramov, 44 Partizanskaya Str., Terney, Primorsky krai, 692150, Russia., Bonebrake TC; School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China., Brennan GL; CSIC, Institute of Marine Sciences, Passeig Marítim de la Barceloneta, 37-49ES08003, Barcelona, Spain., Bret-Harte S; Institute of Arctic Biology, University of Alaska, Fairbanks, AK, USA., Bässler C; Goethe-University Frankfurt, Faculty of Biological Sciences, Institute for Ecology, Evolution and Diversity, Conservation Biology, D- 60438, Frankfurt am Main, Germany.; Bavarian Forest National Park, Freyunger Str. 2, D-94481, Grafenau, Germany.; Ecology of Fungi, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Universitätsstraße 30, 95440, Bayreuth, Germany., Cagnolo L; Consejo de Investigaciones Científicas y Técnicas (CONICET), Instituto Multidisciplinario de Biología Vegetal, Córdoba, Argentina., Cameron EK; Department of Environmental Science, Saint Mary's University, 923 Robie St., Halifax, NS, B3H 3C3, Canada., Chapurlat E; Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden., Creer S; Molecular Ecology and Evolution at Bangor (MEEB), School of Environmental and Natural Sciences, Bangor University, Environment Centre Wales, Deiniol Road, Bangor, Gwynedd, Wales, LL57 2UW, UK., D'Acqui LP; Research Institute on Terrestrial Ecosystems - IRET, National Research Council - CNR, Via Madonna del Piano n° 10, 50019, Sesto Fiorentino, Firenze, Italy.; National Biodiversity Future Center, Palermo, Italy., de Vere N; Natural History Museum of Denmark, University of Copenhagen, Gothersgade 130, 1123, København K, Denmark., Desprez-Loustau ML; INRAE, BIOGECO, F-33610, Cestas, France.; University of Bordeaux, BIOGECO, F-33615, Bordeaux, France., Dongmo MAK; School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China.; International Institute of Tropical Agriculture (IITA), P.O. Box 2008 (Messa), Yaoundé, Cameroon., Dyrholm Jacobsen IB; Greenland Institute of Natural Resources, Kivioq 2, P.O. Box 570, 3900, Nuuk, Greenland., Fisher BL; Entomology, 55 Music Concourse Drive, California Academy of Sciences, San Francisco, CA, 94118, USA.; Madagascar Biodiversity Center, Parc Botanique et Zoologique de Tsimbazaza, Antananarivo, 101, Madagascar., Flores de Jesus M; Legado das Águas, Reserva Votorantin, TPR 188 Km 22, Tapiraí, SP, 18180-000, Brazil., Gilbert GS; Environmental Studies Department, University of California, Santa Cruz, 1156 High St., Santa Cruz, CA, 95065, USA., Griffith GW; Department of Life Sciences, Aberystwyth University, Aberystwyth, Ceredigion, WALES SY23 3DD, UK., Gritsuk AA; Sikhote-Alin State Nature Biosphere Reserve named after K. G. Abramov, 44 Partizanskaya Str., Terney, Primorsky krai, 692150, Russia., Gross A; Research Unit Biodiversity and Conservation Biology, SwissFungi, Swiss Federal Research Institute WSL, Zürcherstrasse 111, CH-8903, Birmensdorf, Switzerland., Grudd H; Swedish Polar Research Secretariat, Abisko Scientific Research Station, Vetenskapens väg 38, SE-981 07, Abisko, Sweden., Halme P; Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä, Finland., Hanna R; Center for Tropical Research, Congo Basin Institute, University of California, Los Angeles (UCLA), Los Angeles, CA, 90095, USA., Hansen J; Department of Ecoscience, Aarhus University, Dk-4000, Roskilde, Denmark., Hansen LH; Department of Ecoscience, Aarhus University, Dk-4000, Roskilde, Denmark., Hegbe ADMT; Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, BP 123, Parakou, Republic of Benin., Hill S; Natural History Museum, Zoology, University of New England, Armidale, NSW, 2351, Australia., Hogg ID; Canadian High Arctic Research Station, Polar Knowledge Canada, PO Box 2150, 1 Uvajuq Road, Cambridge Bay, Nunavut, X0B 0C0, Canada.; Department of Integrative Biology, College of Biological Science, University of Guelph, 50 Stone Road East, Guelph, Ontario, N1G 2W1, Canada.; School of Science, University of Waikato, Private Bag 3105, Hamilton, 3240, New Zealand., Hultman J; Department of Microbiology, University of Helsinki, Viikinkaari 9, FI-00014, Helsinki, Finland.; Natural Resources Institute Finland, Latokartanonkaari 9, 00790, Helsinki, Finland., Hyde KD; Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand., Hynson NA; Pacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, HI, USA., Ivanova N; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, N1G 2W1, Canada.; Nature Metrics North America Ltd., 590 Hanlon Creek Boulevard, Unit 11, Guelph, ON, N1C 0A1, Canada., Karisto P; Plant Pathology Group, Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland.; Plant Health, Natural Resources Institute Finland (Luke), Jokioinen, Finland., Kerdraon D; Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden., Knorre A; Science Department, National Park Krasnoyarsk Stolby, 26a Kariernaya str., 660006, Krasnoyarsk, Russia.; Institute of Ecology and Geography, Siberian Federal University, 79 Svobodny pr., 660041, Krasnoyarsk, Russia., Krisai-Greilhuber I; Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, 1030, Wien, Austria., Kurhinen J; Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland., Kuzmina M; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, N1G 2W1, Canada., Lecomte N; Centre d'études nordiques and Canada Research Chair in Polar and Boreal Ecology, Department of Biology, Pavillon Rémi-Rossignol, 18, Antonine-Maillet, Université de Moncton, Moncton, NB, E1A 3E9, Canada., Lecomte E; Centre d'études nordiques and Canada Research Chair in Polar and Boreal Ecology, Department of Biology, Pavillon Rémi-Rossignol, 18, Antonine-Maillet, Université de Moncton, Moncton, NB, E1A 3E9, Canada., Loaiza V; Department of Evolutionary Biology and Environmental Sciences, University of Zürich, Zürich, Switzerland., Lundin E; Swedish Polar Research Secretariat, Abisko Scientific Research Station, Vetenskapens väg 38, SE-981 07, Abisko, Sweden., Meire A; Swedish Polar Research Secretariat, Abisko Scientific Research Station, Vetenskapens väg 38, SE-981 07, Abisko, Sweden., Mešić A; Laboratory for Biological Diversity, Rudjer Boskovic Institute, Bijenicka cesta 54, HR-10000, Zagreb, Croatia., Miettinen O; Finnish Museum of Natural History, University of Helsinki, P.O. 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Box 64, 00014, Helsinki, Finland.; State Key Laboratory for Information Engineering in Surveying, Mapping and Remote Sensing, Wuhan University, Wuhan, 430079, China.; Wangari Maathai Institute for Environmental and Peace Studies, University of Nairobi, P.O. 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Box 7, 00014, Helsinki, Finland., Rogers HMK; Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden., Rogovsky A; Science Department, National Park Krasnoyarsk Stolby, 26a Kariernaya str., 660006, Krasnoyarsk, Russia., Rozhkov Y; State Nature Reserve Olekminsky, Olekminsk, Russian Federation, Russia., Runnel K; Mycology and Microbiology Center, University of Tartu, Tartu, Estonia.; Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia., Saarto A; The Biodiversity Unit of the University of Turku, Henrikinkatu 2, 20500, Turku, Finland., Savchenko A; Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia., Schlegel M; Research Unit Biodiversity and Conservation Biology, SwissFungi, Swiss Federal Research Institute WSL, Zürcherstrasse 111, CH-8903, Birmensdorf, Switzerland., Schmidt NM; Department of Ecoscience, Aarhus University, Dk-4000, Roskilde, Denmark.; Arctic Research Center, Aarhus University, Dk-4000, Roskilde, Denmark., Seibold S; TUD Dresden University of Technology, Forest Zoology, Pienner Str. 7, 01737, Tharandt, Germany.; Technical University of Munich, Terrestrial Ecology Research Group, Department of Life Science Systems, School of Life Sciences, Hans-Carl-von-Carlowitz-Platz 2, 85354, Freising, Germany., Skjøth C; School of Science and the Environment, University of Worcester, Henwick Grove, Worcester, WR2 6AJ, UK.; Department of Environmental Science, Aarhus University, Frederiksborgvej 399, DK-4000, Roskilde, Denmark., Stengel E; Field Station Fabrikschleichach, Department of Animal Ecology and Tropical Biology (Zoology III), Julius Maximilians University Würzburg, Rauhenebrach, Germany., Sutyrina SV; Sikhote-Alin State Nature Biosphere Reserve named after K. G. Abramov, 44 Partizanskaya Str., Terney, Primorsky krai, 692150, Russia., Syvänperä I; The Biodiversity Unit of the University of Turku, Kevontie 470, 99980, Utsjoki, Finland., Tedersoo L; Mycology and Microbiology Center, University of Tartu, Tartu, Estonia.; College of Science, King Saud University, Riyadh, Saudi Arabia., Timm J; Institute of Arctic Biology, University of Alaska, Fairbanks, AK, USA., Tipton L; School of Natural Science and Mathematics, Chaminade University of Honolulu, Honolulu, HI, USA., Toju H; Laboratory of Ecosystems and Coevolution, Graduate School of Biostudies, Kyoto University, Kyoto, 606-8501, Japan.; Center for Living Systems Information Science (CeLiSIS), Graduate School of Biostudies, Kyoto University, Kyoto, 606-8501, Japan., Uscka-Perzanowska M; Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden., van der Bank M; African Centre for DNA Barcoding (ACDB), University of Johannesburg, PO BOX 524, Auckland Park, 2006, South Africa., Herman van der Bank F; African Centre for DNA Barcoding (ACDB), University of Johannesburg, PO BOX 524, Auckland Park, 2006, South Africa., Vandenbrink B; Canadian High Arctic Research Station, Polar Knowledge Canada, PO Box 2150, 1 Uvajuq Road, Cambridge Bay, Nunavut, X0B 0C0, Canada., Ventura S; Research Institute on Terrestrial Ecosystems - IRET, National Research Council - CNR, Via Madonna del Piano n° 10, 50019, Sesto Fiorentino, Firenze, Italy.; National Biodiversity Future Center, Palermo, Italy., Vignisson SR; Sudurnes Science and Learning Center, Garðvegi 1, 245, Sandgerði, Iceland., Wang X; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China., Weisser WW; Technical University of Munich, Terrestrial Ecology Research Group, Department of Life Science Systems, School of Life Sciences, Hans-Carl-von-Carlowitz-Platz 2, 85354, Freising, Germany., Wijesinghe SN; Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand.; School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand., Joseph Wright S; Smithsonian Tropical Research Institute, Apartado, 0843-03092, Balboa, Panama., Yang C; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China., Yorou NS; Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Faculty of Agronomy, University of Parakou, BP 123, Parakou, Republic of Benin., Young A; Institute of Arctic Biology, University of Alaska, Fairbanks, AK, USA., Yu DW; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.; School of Biological Sciences, University of East Anglia, Norwich, Norfolk, NR4 7TJ, UK.; Yunnan Key Laboratory of Biodiversity and Ecological Security of Gaoligong Mountain, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China., Zakharov EV; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, N1G 2W1, Canada., Hebert PDN; Canadian High Arctic Research Station, Polar Knowledge Canada, PO Box 2150, 1 Uvajuq Road, Cambridge Bay, Nunavut, X0B 0C0, Canada.; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, N1G 2W1, Canada., Roslin T; Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, P. O. Box 65, 00014, Helsinki, Finland.; Department of Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden.
Jazyk: angličtina
Zdroj: Scientific data [Sci Data] 2024 May 30; Vol. 11 (1), pp. 561. Date of Electronic Publication: 2024 May 30.
DOI: 10.1038/s41597-024-03410-0
Abstrakt: Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we present data originating from the Global Spore Sampling Project, comprising 2,768 samples collected during two years at 47 outdoor locations across the world. Each sample represents fungal DNA extracted from 24 m 3 of air. We applied a conservative bioinformatics pipeline that filtered out sequences that did not show strong evidence of representing a fungal species. The pipeline yielded 27,954 species-level operational taxonomic units (OTUs). Each OTU is accompanied by a probabilistic taxonomic classification, validated through comparison with expert evaluations. To examine the potential of the data for ecological analyses, we partitioned the variation in species distributions into spatial and seasonal components, showing a strong effect of the annual mean temperature on community composition.
(© 2024. The Author(s).)
Databáze: MEDLINE
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