The chromosome-level genomes of the herbal magnoliids Warburgia ugandensis and Saururus chinensis.

Autor: Luo L; College of Life Science, South China Agricultural University, Guangzhou, 510642, China.; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China., Fang D; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China., Wang F; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China., Lin Q; College of Life Science, South China Agricultural University, Guangzhou, 510642, China.; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China., Sahu SK; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.; BGI Research, Wuhan, 430074, China., Song Y; BGI Research, Beijing, 102601, China., Kang J; BGI Research, Beijing, 102601, China., Guang X; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China., Liu M; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China., Luo S; Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, Guangdong, 510650, China.; South China National Botanical Garden, Guangzhou, 510650, China., Hao G; College of Life Science, South China Agricultural University, Guangzhou, 510642, China. haogang@scau.edu.cn., Liu H; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China. liuhuan@genomics.cn., Guo X; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China. guoxing@genomics.cn.; BGI Research, Wuhan, 430074, China. guoxing@genomics.cn.
Jazyk: angličtina
Zdroj: Scientific data [Sci Data] 2024 May 30; Vol. 11 (1), pp. 554. Date of Electronic Publication: 2024 May 30.
DOI: 10.1038/s41597-024-03229-9
Abstrakt: Warburgia ugandensis and Saururus chinensis are two of the most important medicinal plants in magnoliids and are widely utilized in traditional Kenya and Chinese medicine, respectively. The absence of higher-quality reference genomes has hindered research on the medicinal compound biosynthesis mechanisms of these plants. We report the chromosome-level genome assemblies of W. ugandensis and S. chinensis, and generated 1.13 Gb and 0.53 Gb genomes from 74 and 27 scaffolds, respectively, using BGI-DIPSEQ, Nanopore, and Hi-C sequencing. The scaffold N50 lengths were 82.97 Mb and 48.53 Mb, and the assemblies were anchored to 14 and 11 chromosomes of W. ugandensis and S. chinensis, respectively. In total, 24,739 and 20,561 genes were annotated, and 98.5% and 98% of the BUSCO genes were fully represented, respectively. The chromosome-level genomes of W. ugandensis and S. chinensis will be valuable resources for understanding the genetics of these medicinal plants, studying the evolution of magnoliids and angiosperms and conserving plant genetic resources.
(© 2024. The Author(s).)
Databáze: MEDLINE
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