FAIR Header Reference genome: a TRUSTworthy standard.

Autor: Wright A; Adaptive Oncology Program, Ontario Institute for Cancer Research, 661 University Avenue Suite 500, Toronto, ON M5G 0A3, Canada., Wilkinson MD; Departamento de Biotecnolog'ıa-Biolog'ıa Vegetal, Escuela T'ecnica Superior de Ingenier'ıa Agron'omica, Alimentaria y de Biosistemas,Centro de Biotecnolog'ıa y Gen'omica de Plantas (CBGP, UPM-INIA/CSIC), Universidad Polit'ecnica de Madrid (UPM) - Instituto Nacional de Investigaci'on y Tecnolog'ıa Agraria y Alimentaria (INIA/CSIC), Pozuelo de Alarc'on, Madrid, ES, Spain., Mungall C; Biosystems Data Science, Lawrence Berkeley National Laboratory, Building: 977, 1 Cyclotron Rd, Berkeley, CA 94720, USA., Cain S; Adaptive Oncology Program, Ontario Institute for Cancer Research, 661 University Avenue Suite 500, Toronto, ON M5G 0A3, Canada., Richards S; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, MS: BCM226, Houston, TX 77030, USA., Sternberg P; Division of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA., Provin E; Department of Horticultural Studies, Texas A&M University, HFSB 204, TAMU 2133, College Station, TX 77848, USA., Jacobs JL; American Type Culture Collection, 10801 University Blvd, Manassas, VA 20110, USA., Geib S; Tropical Pest Genetics and Molecular Biology Research Unit, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, Agricultural Research Service, 64 Nowelo St, Hilo HI 96720, USA., Raciti D; Division of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA., Yook K; Division of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA., Stein L; Adaptive Oncology Program, Ontario Institute for Cancer Research, 661 University Avenue Suite 500, Toronto, ON M5G 0A3, Canada., Molik DC; Arthropod-borne Animal Diseases Research Unit, Center for Grain and Animal Health Research United States Department of Agriculture, Agricultural Research Service, 1515 College Ave, Manhattan, KS 66502 USA.
Jazyk: angličtina
Zdroj: Briefings in bioinformatics [Brief Bioinform] 2024 Mar 27; Vol. 25 (3).
DOI: 10.1093/bib/bbae122
Abstrakt: The lack of interoperable data standards among reference genome data-sharing platforms inhibits cross-platform analysis while increasing the risk of data provenance loss. Here, we describe the FAIR bioHeaders Reference genome (FHR), a metadata standard guided by the principles of Findability, Accessibility, Interoperability and Reuse (FAIR) in addition to the principles of Transparency, Responsibility, User focus, Sustainability and Technology. The objective of FHR is to provide an extensive set of data serialisation methods and minimum data field requirements while still maintaining extensibility, flexibility and expressivity in an increasingly decentralised genomic data ecosystem. The effort needed to implement FHR is low; FHR's design philosophy ensures easy implementation while retaining the benefits gained from recording both machine and human-readable provenance.
(Published by Oxford University Press 2024.)
Databáze: MEDLINE
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