CyVerse: Cyberinfrastructure for open science.

Autor: Swetnam TL; The University of Arizona, Tucson, Arizona, United States of America., Antin PB; The University of Arizona, Tucson, Arizona, United States of America., Bartelme R; The University of Arizona, Tucson, Arizona, United States of America.; Pivot Bio, Berkeley, California, United States of America., Bucksch A; The University of Arizona, Tucson, Arizona, United States of America., Camhy D; Graz University of Technology, Graz, Austria., Chism G; The University of Arizona, Tucson, Arizona, United States of America., Choi I; The University of Arizona, Tucson, Arizona, United States of America., Cooksey AM; The University of Arizona, Tucson, Arizona, United States of America., Cosi M; The University of Arizona, Tucson, Arizona, United States of America., Cowen C; The University of Arizona, Tucson, Arizona, United States of America., Culshaw-Maurer M; The University of Arizona, Tucson, Arizona, United States of America.; The Carpentries, Oakland, California, United States of America., Davey R; The Carpentries, Oakland, California, United States of America.; Earlham Institute, Norwich, United Kingdom., Davey S; The University of Arizona, Tucson, Arizona, United States of America., Devisetty U; The University of Arizona, Tucson, Arizona, United States of America.; Greenlight Biosciences, Durham North Carolina, United States of America., Edgin T; The University of Arizona, Tucson, Arizona, United States of America., Edmonds A; The University of Arizona, Tucson, Arizona, United States of America., Fedorov D; ViQI Inc. Santa Barbara, California, United States of America., Frady J; The University of Arizona, Tucson, Arizona, United States of America., Fonner J; Texas Advanced Computing Center, Austin Texas, United States of America., Gillan JK; The University of Arizona, Tucson, Arizona, United States of America., Hossain I; The University of Arizona, Tucson, Arizona, United States of America., Joyce B; The University of Arizona, Tucson, Arizona, United States of America., Lang K; Know Center GmbH, Graz, Austria., Lee T; The University of Arizona, Tucson, Arizona, United States of America., Littin S; The University of Arizona, Tucson, Arizona, United States of America., McEwen I; The University of Arizona, Tucson, Arizona, United States of America., Merchant N; The University of Arizona, Tucson, Arizona, United States of America., Micklos D; DNA Learning Center, Cold Spring Harbor Laboratory, Long Island New York, United States of America., Nelson A; Boyce Thompson Institute, Ithaca, New York, United States of America., Ramsey A; The University of Arizona, Tucson, Arizona, United States of America., Roberts S; The University of Arizona, Tucson, Arizona, United States of America., Sarando P; The University of Arizona, Tucson, Arizona, United States of America., Skidmore E; The University of Arizona, Tucson, Arizona, United States of America., Song J; Texas Advanced Computing Center, Austin Texas, United States of America., Sprinkle MM; The University of Arizona, Tucson, Arizona, United States of America., Srinivasan S; The University of Arizona, Tucson, Arizona, United States of America., Stanzione D; Texas Advanced Computing Center, Austin Texas, United States of America., Strootman JD; The University of Arizona, Tucson, Arizona, United States of America., Stryeck S; Graz University of Technology, Graz, Austria.; Know Center GmbH, Graz, Austria., Tuteja R; The University of Arizona, Tucson, Arizona, United States of America.; Greenlight Biosciences, Durham North Carolina, United States of America., Vaughn M; Texas Advanced Computing Center, Austin Texas, United States of America., Wali M; Graz University of Technology, Graz, Austria., Wall M; The University of Arizona, Tucson, Arizona, United States of America., Walls R; The University of Arizona, Tucson, Arizona, United States of America.; Critical Path Institute, Tucson, Arizona, United States of America., Wang L; DNA Learning Center, Cold Spring Harbor Laboratory, Long Island New York, United States of America., Wickizer T; The University of Arizona, Tucson, Arizona, United States of America., Williams J; DNA Learning Center, Cold Spring Harbor Laboratory, Long Island New York, United States of America., Wregglesworth J; The University of Arizona, Tucson, Arizona, United States of America., Lyons E; The University of Arizona, Tucson, Arizona, United States of America.
Jazyk: angličtina
Zdroj: PLoS computational biology [PLoS Comput Biol] 2024 Feb 07; Vol. 20 (2), pp. e1011270. Date of Electronic Publication: 2024 Feb 07 (Print Publication: 2024).
DOI: 10.1371/journal.pcbi.1011270
Abstrakt: CyVerse, the largest publicly-funded open-source research cyberinfrastructure for life sciences, has played a crucial role in advancing data-driven research since the 2010s. As the technology landscape evolved with the emergence of cloud computing platforms, machine learning and artificial intelligence (AI) applications, CyVerse has enabled access by providing interfaces, Software as a Service (SaaS), and cloud-native Infrastructure as Code (IaC) to leverage new technologies. CyVerse services enable researchers to integrate institutional and private computational resources, custom software, perform analyses, and publish data in accordance with open science principles. Over the past 13 years, CyVerse has registered more than 124,000 verified accounts from 160 countries and was used for over 1,600 peer-reviewed publications. Since 2011, 45,000 students and researchers have been trained to use CyVerse. The platform has been replicated and deployed in three countries outside the US, with additional private deployments on commercial clouds for US government agencies and multinational corporations. In this manuscript, we present a strategic blueprint for creating and managing SaaS cyberinfrastructure and IaC as free and open-source software.
Competing Interests: The authors have declared that no competing interests exist.
(Copyright: © 2024 Swetnam et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
Databáze: MEDLINE
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