Iron Heme Enzyme-Catalyzed Cyclopropanations with Diazirines as Carbene Precursors: Computational Explorations of Diazirine Activation and Cyclopropanation Mechanism.

Autor: Rogge T; Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States., Zhou Q; Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States., Porter NJ; Division of Chemistry and Chemical Engineering, Division of Biology and Bioengineering, California Institute of Technology, Pasadena, California 91125, United States., Arnold FH; Division of Chemistry and Chemical Engineering, Division of Biology and Bioengineering, California Institute of Technology, Pasadena, California 91125, United States., Houk KN; Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States.
Jazyk: angličtina
Zdroj: Journal of the American Chemical Society [J Am Chem Soc] 2024 Feb 07; Vol. 146 (5), pp. 2959-2966. Date of Electronic Publication: 2024 Jan 25.
DOI: 10.1021/jacs.3c06030
Abstrakt: The mechanism of cyclopropanations with diazirines as air-stable and user-friendly alternatives to commonly employed diazo compounds within iron heme enzyme-catalyzed carbene transfer reactions has been studied by means of density functional theory (DFT) calculations of model systems, quantum mechanics/molecular mechanics (QM/MM) calculations, and molecular dynamics (MD) simulations of the iron carbene and the cyclopropanation transition state in the enzyme active site. The reaction is initiated by a direct diazirine-diazo isomerization occurring in the active site of the enzyme. In contrast, an isomerization mechanism proceeding via the formation of a free carbene intermediate in lieu of a direct, one-step isomerization process was observed for model systems. Subsequent reaction with benzyl acrylate takes place through stepwise C-C bond formation via a diradical intermediate, delivering the cyclopropane product. The origin of the observed diastereo- and enantioselectivity in the enzyme was investigated through MD simulations, which indicate a preferred formation of the cis -cyclopropane by steric control.
Databáze: MEDLINE