Characterization of Microbial Diversity of Two Tomato Cultivars through Targeted Next-Generation Sequencing 16S rRNA and ITS Techniques.

Autor: Abdulsalam RA; Department of Biotechnology and Food Science, Durban University of Technology, Durban 4000, South Africa., Ijabadeniyi OA; Department of Biotechnology and Food Science, Durban University of Technology, Durban 4000, South Africa., Cason ED; Department of Animal Science, University of the Free State, Bloemfontein 9300, South Africa., Sabiu S; Department of Biotechnology and Food Science, Durban University of Technology, Durban 4000, South Africa.
Jazyk: angličtina
Zdroj: Microorganisms [Microorganisms] 2023 Sep 18; Vol. 11 (9). Date of Electronic Publication: 2023 Sep 18.
DOI: 10.3390/microorganisms11092337
Abstrakt: Even though the nutritional and economic values of Solanum lycopersicum (tomato) are substantially impacted by microbial spoilage, the available data on its microbial community, particularly during spoilage, are limited and have primarily been characterized using conventional culture-dependent methods. This study employed a targeted high-throughput next-generation sequencing method to longitudinally characterize the microbial diversity of two South African tomato cultivars (jam and round) at varied storage intervals (1, 6, and 12 days). Throughout the storage period, the bacterial communities of the two cultivars were more diverse than the fungal communities. The microbial diversity of both bacteria and fungi was greater and comparable between the cultivars on day 1, but becomes distinct as the storage period increases, with round tomatoes being more diverse than jam tomato, though, on day 12, jam tomato develops greater diversity than round tomato. Overall, the most abundant phyla (though Proteobacteria was most dominant) were Proteobacteria, Firmicutes, and Bacteriodota in the bacterial communities, while Ascomycota and Basidiomycota formed most fungal communities with Ascomycota being dominant. At the genus level, Pantoea and Klebsiella (bacteria), Hanseniaspora , Stemphylium , and Alternaria (fungi) were prevalent. Taken together, this study casts light on a broad microbial diversity profile thus, confirms the cultivars' diversity and abundance differences.
Databáze: MEDLINE