Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset.

Autor:	Hendriks KP; Department of Biology, Botany, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany; Functional Traits Group, Naturalis Biodiversity Center, Darwinweg 2, 2333 CR Leiden, the Netherlands. Electronic address: kasper.hendriks@naturalis.nl., Kiefer C; Centre for Organismal Studies (COS), Heidelberg University, Im Neuenheimer Feld 345, 69120 Heidelberg, Germany., Al-Shehbaz IA; Missouri Botanical Garden, 4344 Shaw Blvd, St. Louis, MO 63110, USA., Bailey CD; Department of Biology, New Mexico State University, PO Box 30001, MSC 3AF, Las Cruces, NM 88003, USA., Hooft van Huysduynen A; Functional Traits Group, Naturalis Biodiversity Center, Darwinweg 2, 2333 CR Leiden, the Netherlands; Department of Biology, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium., Nikolov LA; Department of Molecular, Cell and Developmental Biology, University of California, 610 Charles E. Young Dr. S., Los Angeles, CA 90095, USA., Nauheimer L; Australian Tropical Herbarium, James Cook University, PO Box 6811, Cairns, QLD 4870, Australia., Zuntini AR; Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK., German DA; South-Siberian Botanical Garden, Altai State University, Barnaul, Lesosechnaya Ulitsa, 25, Barnaul, Altai Krai, Russia., Franzke A; Heidelberg Botanic Garden, Heidelberg University, Im Neuenheimer Feld 361, 69120 Heidelberg, Germany., Koch MA; Centre for Organismal Studies (COS), Heidelberg University, Im Neuenheimer Feld 345, 69120 Heidelberg, Germany., Lysak MA; CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic., Toro-Núñez Ó; Departamento de Botánica, Universidad de Concepción, Barrio Universitario, Concepción, Chile., Özüdoğru B; Department of Biology, Hacettepe University, Beytepe, Ankara 06800, Türkiye., Invernón VR; Sorbonne Université, Muséum National d'Histoire Naturelle, Institut de Systématique, Évolution, Biodiversité (ISYEB), CP 39, 57 rue Cuvier, 75231 Paris Cedex 05, France., Walden N; Centre for Organismal Studies (COS), Heidelberg University, Im Neuenheimer Feld 345, 69120 Heidelberg, Germany., Maurin O; Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK., Hay NM; Department of Biology, Duke University, Durham, NC 27708, USA., Shushkov P; Department of Chemistry, Indiana University, 800 E. Kirkwood Ave., Bloomington, IN 47405, USA., Mandáková T; CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic., Schranz ME; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands., Thulin M; Department of Organismal Biology, Uppsala University, Norbyvägen 18, 752 36 Uppsala, Sweden., Windham MD; Department of Biology, Duke University, Durham, NC 27708, USA., Rešetnik I; Department of Biology, University of Zagreb, Marulićev trg 20/II, 10000 Zagreb, Croatia., Španiel S; Institute of Botany, Slovak Academy of Sciences, Plant Science and Biodiversity Centre, Dúbravská cesta 9, 845 23 Bratislava, Slovakia., Ly E; Functional Traits Group, Naturalis Biodiversity Center, Darwinweg 2, 2333 CR Leiden, the Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA Leeuwarden, the Netherlands; Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, the Netherlands., Pires JC; Soil and Crop Sciences, Colorado State University, 307 University Ave., Fort Collins, CO 80523-1170, USA., Harkess A; HudsonAlpha Institute for Biotechnology, 601 Genome Way Northwest, Huntsville, AL 35806, USA., Neuffer B; Department of Biology, Botany, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany., Vogt R; Botanischer Garten und Botanisches Museum, Freie Universität Berlin, Königin-Luise-Straße 6-8, 14195 Berlin, Germany., Bräuchler C; Department of Botany, Natural History Museum Vienna, Burgring 7, 1010 Vienna, Austria., Rainer H; Department of Botany, Natural History Museum Vienna, Burgring 7, 1010 Vienna, Austria., Janssens SB; Department of Biology, KU Leuven, Kasteelpark Arenberg 31 - box 2435, 3001 Leuven, Belgium; Meise Botanic Garden, Nieuwelaan 38, 1860 Meise, Belgium., Schmull M; Harvard University Herbaria, 22 Divinity Ave., Cambridge, MA 02138, USA., Forrest A; Centre for Middle Eastern Plants, Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh EH3 5LR, UK., Guggisberg A; ETH Zürich, Institut für Integrative Biologie, Universitätstrasse 16, 8092 Zürich, Switzerland., Zmarzty S; Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK., Lepschi BJ; Australian National Herbarium, Centre for Australian National Biodiversity Research, Clunies Ross St, Acton, ACT 2601, Australia., Scarlett N; La Trobe University, Plenty Road and Kingsbury Dr., Bundoora, VIC 3086, Australia., Stauffer FW; Conservatory and Botanic Gardens of Geneva, CP 60, Chambésy, 1292 Geneva, Switzerland., Schönberger I; Manaaki Whenua Landcare Research, Allan Herbarium, PO Box 69040, Lincoln, New Zealand., Heenan P; Manaaki Whenua Landcare Research, Allan Herbarium, PO Box 69040, Lincoln, New Zealand., Baker WJ; Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK., Forest F; Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK., Mummenhoff K; Department of Biology, Botany, University of Osnabrück, Barbarastraße 11, 49076 Osnabrück, Germany. Electronic address: kmummenh@uni-osnabrueck.de., Lens F; Functional Traits Group, Naturalis Biodiversity Center, Darwinweg 2, 2333 CR Leiden, the Netherlands; Institute of Biology Leiden, Plant Sciences, Leiden University, Sylviusweg 72, 2333 BE Leiden, the Netherlands. Electronic address: frederic.lens@naturalis.nl.
Jazyk:	angličtina
Zdroj:	Current biology : CB [Curr Biol] 2023 Oct 09; Vol. 33 (19), pp. 4052-4068.e6. Date of Electronic Publication: 2023 Sep 01.
DOI:	10.1016/j.cub.2023.08.026
Abstrakt:	The mustard family (Brassicaceae) is a scientifically and economically important family, containing the model plant Arabidopsis thaliana and numerous crop species that feed billions worldwide. Despite its relevance, most phylogenetic trees of the family are incompletely sampled and often contain poorly supported branches. Here, we present the most complete Brassicaceae genus-level family phylogenies to date (Brassicaceae Tree of Life or BrassiToL) based on nuclear (1,081 genes, 319 of the 349 genera; 57 of the 58 tribes) and plastome (60 genes, 265 genera; all tribes) data. We found cytonuclear discordance between the two, which is likely a result of rampant hybridization among closely and more distantly related lineages. To evaluate the impact of such hybridization on the nuclear phylogeny reconstruction, we performed five different gene sampling routines, which increasingly removed putatively paralog genes. Our cleaned subset of 297 genes revealed high support for the tribes, whereas support for the main lineages (supertribes) was moderate. Calibration based on the 20 most clock-like nuclear genes suggests a late Eocene to late Oligocene origin of the family. Finally, our results strongly support a recently published new family classification, dividing the family into two subfamilies (one with five supertribes), together representing 58 tribes. This includes five recently described or re-established tribes, including Arabidopsideae, a monogeneric tribe accommodating Arabidopsis without any close relatives. With a worldwide community of thousands of researchers working on Brassicaceae and its diverse members, our new genus-level family phylogeny will be an indispensable tool for studies on biodiversity and plant biology. Competing Interests: Declaration of interests The authors declare no competing interests. (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
Databáze:	MEDLINE
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