The Rhodoexplorer Platform for Red Algal Genomics and Whole-Genome Assemblies for Several Gracilaria Species.

Autor:	Lipinska AP; Department of Algal Development and Evolution, Max Planck Institute for Biology Tubingen, Tubingen, Germany.; CNRS, UMR 8227, Laboratory of Integrative Biology of Marine Models, Sorbonne Université, Station Biologique de Roscoff, Roscoff, France., Krueger-Hadfield SA; Department of Biology, University of Alabama at Birmingham, Alabama, USA., Godfroy O; CNRS, UMR 8227, Laboratory of Integrative Biology of Marine Models, Sorbonne Université, Station Biologique de Roscoff, Roscoff, France., Dittami SM; CNRS, UMR 8227, Laboratory of Integrative Biology of Marine Models, Sorbonne Université, Station Biologique de Roscoff, Roscoff, France., Ayres-Ostrock L; Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, SP, Brazil.; Hortimare, Breeding and Propagating Seaweed, Heerhugowaard, The Netherlands., Bonthond G; Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl von Ossietzky University Oldenburg, Wilhelmshaven, Germany., Brillet-Guéguen L; CNRS, UMR 8227, Laboratory of Integrative Biology of Marine Models, Sorbonne Université, Station Biologique de Roscoff, Roscoff, France.; CNRS, Sorbonne Université, FR2424, ABiMS-IFB, Station Biologique, Roscoff, France., Coelho S; Department of Algal Development and Evolution, Max Planck Institute for Biology Tubingen, Tubingen, Germany., Corre E; CNRS, Sorbonne Université, FR2424, ABiMS-IFB, Station Biologique, Roscoff, France., Cossard G; Department of Algal Development and Evolution, Max Planck Institute for Biology Tubingen, Tubingen, Germany., Destombe C; CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, IRL 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, Roscoff, France., Epperlein P; Department of Algal Development and Evolution, Max Planck Institute for Biology Tubingen, Tubingen, Germany., Faugeron S; CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, IRL 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, Roscoff, France.; Núcleo Milenio MASH, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile., Ficko-Blean E; CNRS, UMR 8227, Laboratory of Integrative Biology of Marine Models, Sorbonne Université, Station Biologique de Roscoff, Roscoff, France., Beltrán J; CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, IRL 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, Roscoff, France.; Núcleo Milenio MASH, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile., Lavaut E; CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, IRL 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, Roscoff, France., Le Bars A; CNRS, Sorbonne Université, FR2424, ABiMS-IFB, Station Biologique, Roscoff, France.; CNRS, Institut Français de Bioinformatique, IFB-core, Évry, France., Marchi F; Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, SP, Brazil., Mauger S; CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, IRL 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, Roscoff, France., Michel G; CNRS, UMR 8227, Laboratory of Integrative Biology of Marine Models, Sorbonne Université, Station Biologique de Roscoff, Roscoff, France., Potin P; CNRS, UMR 8227, Laboratory of Integrative Biology of Marine Models, Sorbonne Université, Station Biologique de Roscoff, Roscoff, France., Scornet D; CNRS, UMR 8227, Laboratory of Integrative Biology of Marine Models, Sorbonne Université, Station Biologique de Roscoff, Roscoff, France., Sotka EE; Department of Biology, College of Charleston, Charleston, South Carolina, USA., Weinberger F; Marine Ecology Division, GEOMAR Helmholtz-Zentrum für Ozeanforschung, Kiel, Germany., Cabral de Oliveira M; Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, SP, Brazil., Guillemin ML; CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, IRL 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, Roscoff, France.; Núcleo Milenio MASH, Facultad de Ciencias, Instituto de Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia, Chile.; Centro FONDAP de Investigación de Ecosistemas Marinos de Altas Latitudes (IDEAL), Valdivia, Chile., Plastino EM; Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, SP, Brazil., Valero M; CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, IRL 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, Roscoff, France.
Jazyk:	angličtina
Zdroj:	Genome biology and evolution [Genome Biol Evol] 2023 Jul 03; Vol. 15 (7).
DOI:	10.1093/gbe/evad124
Abstrakt:	Macroalgal (seaweed) genomic resources are generally lacking as compared with other eukaryotic taxa, and this is particularly true in the red algae (Rhodophyta). Understanding red algal genomes is critical to understanding eukaryotic evolution given that red algal genes are spread across eukaryotic lineages from secondary endosymbiosis and red algae diverged early in the Archaeplastids. The Gracilariales is a highly diverse and widely distributed order including species that can serve as ecosystem engineers in intertidal habitats and several notorious introduced species. The genus Gracilaria is cultivated worldwide, in part for its production of agar and other bioactive compounds with downstream pharmaceutical and industrial applications. This genus is also emerging as a model for algal evolutionary ecology. Here, we report new whole-genome assemblies for two species (Gracilaria chilensis and Gracilaria gracilis), a draft genome assembly of Gracilaria caudata, and genome annotation of the previously published Gracilaria vermiculophylla genome. To facilitate accessibility and comparative analysis, we integrated these data in a newly created web-based portal dedicated to red algal genomics (https://rhodoexplorer.sb-roscoff.fr). These genomes will provide a resource for understanding algal biology and, more broadly, eukaryotic evolution. (© The Author(s) 2023. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution.)
Databáze:	MEDLINE
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