Genome-Wide Search for Associations with Meat Production Parameters in Karachaevsky Sheep Breed Using the Illumina BeadChip 600 K.

Autor: Krivoruchko A; Federal Seфey Budgetary Scientific Institution, North Caucasian Federal Scientific Agrarian Centre, 356241 Mikhailovsk, Russia.; Department of Genetic and Selection, FSAEIHE, North-Caucasus Federal University, 355017 Stavropol, Russia., Likhovid A; Department of Genetic and Selection, FSAEIHE, North-Caucasus Federal University, 355017 Stavropol, Russia., Kanibolotskaya A; Federal Seфey Budgetary Scientific Institution, North Caucasian Federal Scientific Agrarian Centre, 356241 Mikhailovsk, Russia., Saprikina T; Federal Seфey Budgetary Scientific Institution, North Caucasian Federal Scientific Agrarian Centre, 356241 Mikhailovsk, Russia., Safaryan E; Federal Seфey Budgetary Scientific Institution, North Caucasian Federal Scientific Agrarian Centre, 356241 Mikhailovsk, Russia., Yatsyk O; Federal Seфey Budgetary Scientific Institution, North Caucasian Federal Scientific Agrarian Centre, 356241 Mikhailovsk, Russia.
Jazyk: angličtina
Zdroj: Genes [Genes (Basel)] 2023 Jun 19; Vol. 14 (6). Date of Electronic Publication: 2023 Jun 19.
DOI: 10.3390/genes14061288
Abstrakt: In a group of Karachaevsky rams, a genome-wide associations analysis of single nucleotide polymorphisms (SNPs) with live parameters of meat production was performed. We used for genotyping the Ovine Infinium HD BeadChip 600 K, which consists of points to detection of 606,000 polymorphisms. A total of 12 SNPs was found to be significantly associated with live meat quality parameters of the corpus and legs and ultrasonic traits. In this case, 11 candidate genes were described, the polymorphic variants of which can change in sheep body parameters. We found SNPs in the exons, introns, and other regions of some genes and transcripts: CLVS1 , EVC2 , KIF13B , ENSOART00000000511.1 , KCNH5 , NEDD4 , LUZP2 , MREG , KRT20 , KRT23 and FZD6 . The described genes involved in the metabolic pathways of cell differentiation, proliferation and apoptosis are connected with the regulation of the gastrointestinal, immune and nervous systems. In known productivity genes (MSTN, MEF2B, FABP4, etc.), loci were not found to be a significant presence of influence on the meat productivity of the Karachaevsky sheep phenotypes. Our study confirms the possible involvement of the identified candidate genes in the formation of the phenotypes of productivity traits in sheep and indicates the need for new research into candidate genes structure in point to detect their polymorphisms.
Databáze: MEDLINE