Using ChromEvol to Determine the Mode of Chromosomal Evolution.
| Autor: | Escudero M; Department of Plant Biology and Ecology, University of Seville, Seville, Spain., Maguilla E; Department of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, Seville, Spain., Márquez-Corro JI; Department of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, Seville, Spain., Martín-Bravo S; Department of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, Seville, Spain., Mayrose I; School of Plant Sciences and Food Security, The George S. Wise Faculty of Life Sciences, Tel-Aviv University, Tel-Aviv, Israel., Shafir A; School of Plant Sciences and Food Security, The George S. Wise Faculty of Life Sciences, Tel-Aviv University, Tel-Aviv, Israel., Tan L; Panxi Crops Research and Utilization Key Laboratory of Sichuan Province, Xichang University, Xichang, China., Tribble C; School of Life Sciences, University of Hawai`i at Mānoa, Honolulu, HI, USA., Zenil-Ferguson R; Department of Biology, University of Kentucky, Lexington, KY, USA. |
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| Jazyk: | angličtina |
| Zdroj: | Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2023; Vol. 2672, pp. 529-547. |
| DOI: | 10.1007/978-1-0716-3226-0_32 |
| Abstrakt: | The ChromEvol software was the first to implement a likelihood-based approach, using probabilistic models that depict the pattern of chromosome number change along a specified phylogeny. The initial models have been completed and expanded during the last years. New parameters that model polyploid chromosome evolution have been implemented in ChromEvol v.2. In recent years, new and more complex models have been developed. The BiChrom model is able to implement two distinct chromosome models for the two possible trait states of a binary character of interest. ChromoSSE jointly implements chromosome evolution, speciation, and extinction. In the near future, we will be able to study chromosome evolution with increasingly complex models. (© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.) |
| Databáze: | MEDLINE |
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