Managing the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis.

Autor:	Fontdevila Pareta N; Plant Pathology Laboratory, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium., Khalili M; Univ. Bordeaux, INRAE, UMR BFP, Villenave d'Ornon, France.; EGFV, Univ. Bordeaux, INRAE, ISVV, Villenave d'Ornon, France., Maachi A; Abiopep S.L., Murcia, Spain., Rivarez MPS; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.; College of Agriculture and Agri-Industries, Caraga State University, Butuan, Philippines., Rollin J; Plant Pathology Laboratory, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium.; DNAVision (Belgium), Charleroi, Belgium., Salavert F; School of Natural and Environmental Sciences, Faculty of Science, Agriculture and Engineering, Newcastle University, Newcastle upon Tyne, United Kingdom., Temple C; Plant Pathology Laboratory, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium., Aranda MA; Department of Stress Biology and Plant Pathology, Center for Edaphology and Applied Biology of Segura, Spanish National Research Council (CSIC), Murcia, Spain., Boonham N; School of Natural and Environmental Sciences, Faculty of Science, Agriculture and Engineering, Newcastle University, Newcastle upon Tyne, United Kingdom., Botermans M; Netherlands Institute for Vectors, Invasive Plants and Plant Health (NIVIP), Wageningen, Netherlands., Candresse T; Univ. Bordeaux, INRAE, UMR BFP, Villenave d'Ornon, France., Fox A; School of Natural and Environmental Sciences, Faculty of Science, Agriculture and Engineering, Newcastle University, Newcastle upon Tyne, United Kingdom.; Fera Science Ltd, York Biotech Campus, York, United Kingdom., Hernando Y; Abiopep S.L., Murcia, Spain., Kutnjak D; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia., Marais A; Univ. Bordeaux, INRAE, UMR BFP, Villenave d'Ornon, France., Petter F; Fera Science Ltd, York Biotech Campus, York, United Kingdom., Ravnikar M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia., Selmi I; Plant Pathology Laboratory, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium., Tahzima R; Plant Pathology Laboratory, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium.; Plant Sciences Unit, Institute for Agricultural, Fisheries and Food Research (ILVO), Merelbeke, Belgium., Trontin C; European and Mediterranean Plant Protection Organization, Paris, France., Wetzel T; DLR Rheinpfalz, Institute of Plant Protection, Neustadt an der Weinstrasse, Germany., Massart S; Plant Pathology Laboratory, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium.; Bioversity International, Montpellier, France.
Jazyk:	angličtina
Zdroj:	Frontiers in microbiology [Front Microbiol] 2023 May 30; Vol. 14, pp. 1181562. Date of Electronic Publication: 2023 May 30 (Print Publication: 2023).
DOI:	10.3389/fmicb.2023.1181562
Abstrakt:	The advances in high-throughput sequencing (HTS) technologies and bioinformatic tools have provided new opportunities for virus and viroid discovery and diagnostics. Hence, new sequences of viral origin are being discovered and published at a previously unseen rate. Therefore, a collective effort was undertaken to write and propose a framework for prioritizing the biological characterization steps needed after discovering a new plant virus to evaluate its impact at different levels. Even though the proposed approach was widely used, a revision of these guidelines was prepared to consider virus discovery and characterization trends and integrate novel approaches and tools recently published or under development. This updated framework is more adapted to the current rate of virus discovery and provides an improved prioritization for filling knowledge and data gaps. It consists of four distinct steps adapted to include a multi-stakeholder feedback loop. Key improvements include better prioritization and organization of the various steps, earlier data sharing among researchers and involved stakeholders, public database screening, and exploitation of genomic information to predict biological properties. Competing Interests: AF was employed by Fera Science Ltd. AyM and YH were employed by Abiopep S.L. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. (Copyright © 2023 Fontdevila, Khalili, Maachi, Rivarez, Rollin, Salavert, Temple, Aranda, Boonham, Botermans, Candresse, Fox, Hernando, Kutnjak, Marais, Petter, Ravnikar, Selmi, Tahzima, Trontin, Wetzel and Massart.)
Databáze:	MEDLINE
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