Sainfoin ( Onobrychis spp.) crop ontology: supporting germplasm characterization and international research collaborations.

Autor:	Karabulut E; Bioengineering Department, Adana Alparslan Türkeş Science and Technology University, Adana, Türkiye., Erkoç K; Bioengineering Department, Adana Alparslan Türkeş Science and Technology University, Adana, Türkiye., Acı M; Bioengineering Department, Adana Alparslan Türkeş Science and Technology University, Adana, Türkiye.; The Land Institute, Salina, KS, United States., Aydın M; Department of Computer Engineering, Kafkas University, Kars, Türkiye., Barriball S; The Land Institute, Salina, KS, United States., Braley J; Donald Danforth Plant Science Center, St. Louis, MO, United States., Cassetta E; The Land Institute, Salina, KS, United States., Craine EB; The Land Institute, Salina, KS, United States., Diaz-Garcia L; Department of Viticulture and Enology, University of California Davis, Davis, CA, United States., Hershberger J; Plant and Environmental Sciences Department, Clemson University, Clemson, SC, United States., Meyering B; The Land Institute, Salina, KS, United States., Miller AJ; Donald Danforth Plant Science Center, St. Louis, MO, United States.; Department. of Biology, Saint Louis University, St. Louis, MO, United States., Rubin MJ; Donald Danforth Plant Science Center, St. Louis, MO, United States., Tesdell O; Department of Geography, Birzeit University, Birzeit, West Bank, Palestine., Schlautman B; The Land Institute, Salina, KS, United States., Şakiroğlu M; Bioengineering Department, Adana Alparslan Türkeş Science and Technology University, Adana, Türkiye.
Jazyk:	angličtina
Zdroj:	Frontiers in plant science [Front Plant Sci] 2023 May 15; Vol. 14, pp. 1177406. Date of Electronic Publication: 2023 May 15 (Print Publication: 2023).
DOI:	10.3389/fpls.2023.1177406
Abstrakt:	Sainfoin ( Onobrychis spp.) is a perennial forage legume that is also attracting attention as a perennial pulse with potential for human consumption. The dual use of sainfoin underpins diverse research and breeding programs focused on improving sainfoin lines for forage and pulses, which is driving the generation of complex datasets describing high dimensional phenotypes in the post-omics era. To ensure that multiple user groups, for example, breeders selecting for forage and those selecting for edible seed, can utilize these rich datasets, it is necessary to develop common ontologies and accessible ontology platforms. One such platform, Crop Ontology, was created in 2008 by the Consortium of International Agricultural Research Centers (CGIAR) to host crop-specific trait ontologies that support standardized plant breeding databases. In the present study, we describe the sainfoin crop ontology (CO). An in-depth literature review was performed to develop a comprehensive list of traits measured and reported in sainfoin. Because the same traits can be measured in different ways, ultimately, a set of 98 variables (variable = plant trait + method of measurement + scale of measurement) used to describe variation in sainfoin were identified. Variables were formatted and standardized based on guidelines provided here for inclusion in the sainfoin CO. The 98 variables contained a total of 82 traits from four trait classes of which 24 were agronomic, 31 were morphological, 19 were seed and forage quality related, and 8 were phenological. In addition to the developed variables, we have provided a roadmap for developing and submission of new traits to the sainfoin CO. Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. (Copyright © 2023 Karabulut, Erkoç, Acı, Aydın, Barriball, Braley, Cassetta, Craine, Diaz-Garcia, Hershberger, Meyering, Miller, Rubin, Tesdell, Schlautman and Şakiroğlu.)
Databáze:	MEDLINE
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