Genetic Diversity and Population Structure of European Soybean Germplasm Revealed by Single Nucleotide Polymorphism.

Autor: Andrijanić Z; Centre of Excellence for Biodiversity and Molecular Plant Breeding, Svetošimunska Cesta 25, 10000 Zagreb, Croatia., Nazzicari N; Research Centre for Animal Production and Aquaculture, Council for Agricultural Research and Economics (CREA), Viale Piacenza 29, 26900 Lodi, Italy., Šarčević H; Centre of Excellence for Biodiversity and Molecular Plant Breeding, Svetošimunska Cesta 25, 10000 Zagreb, Croatia.; Faculty of Agriculture, University of Zagreb, Svetošimunska Cesta 25, 10000 Zagreb, Croatia., Sudarić A; Centre of Excellence for Biodiversity and Molecular Plant Breeding, Svetošimunska Cesta 25, 10000 Zagreb, Croatia.; Agricultural Institute Osijek, Južno Predgrađe 17, 31000 Osijek, Croatia., Annicchiarico P; Research Centre for Animal Production and Aquaculture, Council for Agricultural Research and Economics (CREA), Viale Piacenza 29, 26900 Lodi, Italy., Pejić I; Centre of Excellence for Biodiversity and Molecular Plant Breeding, Svetošimunska Cesta 25, 10000 Zagreb, Croatia.; Faculty of Agriculture, University of Zagreb, Svetošimunska Cesta 25, 10000 Zagreb, Croatia.
Jazyk: angličtina
Zdroj: Plants (Basel, Switzerland) [Plants (Basel)] 2023 Apr 29; Vol. 12 (9). Date of Electronic Publication: 2023 Apr 29.
DOI: 10.3390/plants12091837
Abstrakt: Soybean is the most grown high-protein crop in the world. Despite the rapid increase of acreage and production volume, European soybean production accounts for only 34% of its consumption in Europe. This study aims to support the optimal exploitation of genetic resources by European breeding programs by investigating the genetic diversity and the genetic structure of 207 European cultivars or American introductions registered in Europe, which were genotyped by the SoySNP50K array. The expected heterozygosity (H e ) was 0.34 for the entire collection and ranged among countries from 0.24 for Swiss cultivars to 0.32 for American cultivars (partly reflecting differences in sample size between countries). Cluster analysis grouped all genotypes into two main clusters with eight subgroups that corresponded to the country of origin of cultivars and their maturity group. Pairwise F st values between countries of origin showed the highest differentiation of Swiss cultivars from the rest of the European gene pool, while the lowest mean differentiation was found between American introductions and all other European countries. On the other hand, F st values between maturity groups were much lower compared to those observed between countries. In analysis of molecular variance, the total genetic variation was partitioned either by country of origin or by maturity group, explaining 9.1% and 3.5% of the total genetic variance, respectively. On the whole, our results suggest that the European soybean gene pool still has sufficient diversity due to the different historical breeding practices in western and eastern countries and the relatively short period of breeding in Europe.
Databáze: MEDLINE