Identifying novel risk conferring genes involved in glycosylation processes with familial schizophrenia in an Indian cohort: Prediction of ADAMTS9 gene variant for structural stability.

Autor: Shekhar BR; Genetic Research Centre, ICMR-National Institute for Research in Reproductive and Child Health, Parel, Mumbai, Maharashtra 400012, India; Stem Cell Biology, ICMR-National Institute for Research in Reproductive and Child Health, Parel, Mumbai, Maharashtra 400012, India., Rupani K; Department of Psychiatry, Seth GS Medical College and KEM Hospital, Parel, Mumbai, Maharashtra 400012, India., Parkar SR; Department of Psychiatry, Seth GS Medical College and KEM Hospital, Parel, Mumbai, Maharashtra 400012, India., Nayak AS; Department of Psychiatry, Seth GS Medical College and KEM Hospital, Parel, Mumbai, Maharashtra 400012, India., Kumbhar BV; Department of Biological Sciences, Sunandan Divatia School of Science, NMIMS University (Deemed), Mumbai, Maharashtra 400056, India., Khare SP; Symbiosis School of Biological Sciences, Symbiosis International University, Pune, Maharashtra 412115, India., Menon S; Stem Cell Biology, ICMR-National Institute for Research in Reproductive and Child Health, Parel, Mumbai, Maharashtra 400012, India., Gawde H; Genetic Research Centre, ICMR-National Institute for Research in Reproductive and Child Health, Parel, Mumbai, Maharashtra 400012, India., Das DK; Stem Cell Biology, ICMR-National Institute for Research in Reproductive and Child Health, Parel, Mumbai, Maharashtra 400012, India. Electronic address: dasd@nirrch.res.in.
Jazyk: angličtina
Zdroj: Gene [Gene] 2023 Jul 01; Vol. 872, pp. 147443. Date of Electronic Publication: 2023 Apr 25.
DOI: 10.1016/j.gene.2023.147443
Abstrakt: Schizophrenia is a complex neuropsychiatric disorder and heritability is as high as 80 % making it the most heritable mental disorder. Although GWAS has identified numerous variants, the pathophysiology is still elusive. Here, an attempt was made to identify genetic risk factors in familial cases of schizophrenia that are associated with a common causative pathway. To achieve this objective, exome sequencing was done in 4 familial cases and identified six unique coding variants in five genes. Among these genes, PIGQ gene has two pathogenic variants, one nonsense and in-frame deletion. One missense variant in GALNT16 and one in GALNT5 have variable damaging score, however, the other variants, in ADAMTS9 and in LTBP4 have the highest damaging score. Further analysis showed that the variant of LTBP4 was not present in the functional domain. The other missense variant in the ADAMTS9 gene was found to be significant and was present in the thrombospondin repeat motif, one of the important motifs. Detailed molecular dynamics simulation study on this variant showed a damaging effect on structural stability. Since, all these genes culminated into the glycosylation process, it was evident that an aberrant glycosylation process may be one of the risk factors. Although, extracellular matrix formation through glycosylation have been shown to be associated, the involvement of ADAMTS9 and PIGQ gene mediated glycosylation has not been reported. In this paper, a novel link between ADAMTS9 and PIGQ gene with schizophrenia have been reported. Therefore, this novel observation has contributed immensely to the existing knowledge on risk factor of Schizophrenia.
Competing Interests: Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Dhanjit K Das reports financial support was provided by Science & Engineering Research Board, Govt of India (EMR/2016/2323). Bipin Raj Shekhar reports a relationship with India Ministry of Science & Technology Department of Biotechnology (DBT/JRF/141AL/460) that includes: employment.
(Copyright © 2023 Elsevier B.V. All rights reserved.)
Databáze: MEDLINE
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