Community-developed checklists for publishing images and image analyses.

Autor: Schmied C; Fondazione Human Technopole, Viale Rita Levi-Montalcini 1, 20157 Milano, Italy.; Present address: Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Rössle-Str. 10, 13125 Berlin, Germany., Nelson MS; Department of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI, 53706, USA., Avilov S; Max Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany., Bakker GJ; Medical BioSciences department, Radboud University Medical Centre, Nijmegen, Netherlands., Bertocchi C; Laboratory for Molecular mechanics of cell adhesions, Pontificia Universidad Católica de Chile Santiago.; Osaka University, Graduate School of Engineering Science, Japan., Bischof J; Euro-BioImaging ERIC, Bio-Hub, Meyerhofstr. 1, 69117 Heidelberg, Germany., Boehm U; Carl Zeiss AG, Carl-Zeiss-Straße 22, 73447 Oberkochen, Germany., Brocher J; BioVoxxel, Scientific Image Processing and Analysis, Eugen-Roth-Strasse 8, 67071 Ludwigshafen, Germany., Carvalho M; Nanophotonics and BioImaging Facility at INL, International Iberian Nanotechnology Laboratory, 4715-330, Portugal., Chiritescu C; Phi Optics, Inc., 1800 S. Oak St, Ste 106, Champaign, IL 61820, USA., Christopher J; Biochemistry Center Heidelberg, Heidelberg University, Germany., Cimini BA; Imaging Platform, Broad Institute, Cambridge, MA 02142., Conde-Sousa E; i3S, Instituto de Investigação e Inovação Em Saúde and INEB, Instituto de Engenharia Biomédica, Universidade do Porto, Porto, Portugal., Ebner M; Fondazione Human Technopole, Viale Rita Levi-Montalcini 1, 20157 Milano, Italy., Ecker R; Translational Research Institute, Queensland University of Technology, 37 Kent Street, Woolloongabba, QLD 4102, Australia.; School of Biomedical Sciences, Faculty of Health, Queensland University of Technology, Brisbane, QLD 4059, Australia.; TissueGnostics GmbH, 1020 Vienna, Austria., Eliceiri K; Department of Medical Physics and Biomedical Engineering, University of Wisconsin-Madison, Madison, WI, 53706, USA., Fernandez-Rodriguez J; Centre for Cellular Imaging Core Facility, Sahlgrenska Academy, University of Gothenburg, Sweden., Gaudreault N; Allen Institute for Cell Science, Seattle, WA, USA., Gelman L; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland., Grunwald D; RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA., Gu T; University of Oklahoma, Norman, OK, USA., Halidi N; Advanced Light Microscopy Unit, Centre for Genomic Regulation, Barcelona, Spain., Hammer M; RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA., Hartley M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Held M; Centre for Cell Imaging, The University of Liverpool, UK., Jug F; Fondazione Human Technopole, Viale Rita Levi-Montalcini 1, 20157 Milano, Italy., Kapoor V; Department of AI research, Kapoor Labs, Paris, 75005, France., Koksoy AA; MD Anderson Cancer Center, Houston, TX, USA., Lacoste J; MIA Cellavie Inc., Montreal, QC Canada., Dévédec SL; Division of Drug Discovery and Safety, Cell Observatory, Leiden Academic Centre for Drug Research, Leiden University, 2333 CC Leiden, The Netherlands., Guyader SL; Karolinska Institutet, Hälsovägen 7C, 14157, Huddinge, Sweden., Liu P; Key Laboratory for Modern Measurement Technology and Instruments of Zhejiang Province, College of Optical and Electronic Technology, China Jiliang University, Hangzhou, China., Martins GG; Advanced Imaging Facility, Instituto Gulbenkian de Ciência, Oeiras 2780-156 - Portugal., Mathur A; Euro-BioImaging ERIC, Bio-Hub, Meyerhofstr. 1, 69117 Heidelberg, Germany., Miura K; Bioimage Analysis & Research, 69127 Heidelberg/Germany., Montero Llopis P; MicRoN Core, Harvard Medical School, Boston, MA, USA., Nitschke R; Life Imaging Center, Signalling Research Centres CIBSS and BIOSS, University of Freiburg, Germany., North A; Bio-Imaging Resource Center, The Rockefeller University, New York, NY USA., Parslow AC; Baker Institute Microscopy Platform, Baker Heart and Diabetes Institute, Melbourne, VIC, 3004, Australia., Payne-Dwyer A; School of Physics, Engineering and Technology, University of York, Heslington, YO10 5DD, UK., Plantard L; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland., Ali R; King Abdullah International Medical Research Center (KAIMRC), Medical Research Core Facility and Platforms (MRCFP), King Saud bin Abdulaziz University for Health Sciences (KSAU-HS), Ministry of National Guard Health Affairs (MNGHA), Riyadh 11481, Saudi Arabia., Schroth-Diez B; Light Microscopy Facility, Max Planck Institute of Molecular Cell Biology and Genetics Dresden, Pfotenhauerstrasse 108, 01307 Dresden, Germany., Schütz L; ariadne.ai (Germany) GmbH, 69115 Heidelberg, Germany., Scott RT; Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA, 94035, USA., Seitz A; BioImaging & Optics Platform (BIOP), Ecole Polytechnique Fédérale de Lausanne (EPFL), Faculty of Life sciences (SV), CH-1015 Lausanne., Selchow O; Microscopy & BioImaging Consulting, Image Processing & Large Data Handling, Tobias-Hoppe-Strassse 3, 07548 Gera, Germany., Sharma VP; Bio-Imaging Resource Center, The Rockefeller University, New York, NY USA., Spitaler M; Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany., Srinivasan S; Imaging and Morphology Support Core, Oregon National Primate Research Center - (ONPRC - OHSU West Campus), Beaverton, Oregon 97006, USA., Strambio-De-Castillia C; Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester, MA, 01605, USA., Taatjes D; Department of Pathology and Laboratory Medicine, Microscopy Imaging Center (RRID# SCR_018821), Center for Biomedical Shared Resources, University of Vermont, Burlington, VT 05405 USA., Tischer C; Centre for Bioimage Analysis, EMBL Heidelberg, Meyerhofstr. 1, 69117 Heidelberg, Germany., Jambor HK; NCT-UCC, Medizinische Fakultät TU Dresden, Fetscherstrasse 105, 01307 Dresden/Germany.
Jazyk: angličtina
Zdroj: ArXiv [ArXiv] 2023 Sep 14. Date of Electronic Publication: 2023 Sep 14.
Abstrakt: Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However for scientists wishing to publish the obtained images and image analyses results, there are to date no unified guidelines. Consequently, microscopy images and image data in publications may be unclear or difficult to interpret. Here we present community-developed checklists for preparing light microscopy images and image analysis for publications. These checklists offer authors, readers, and publishers key recommendations for image formatting and annotation, color selection, data availability, and for reporting image analysis workflows. The goal of our guidelines is to increase the clarity and reproducibility of image figures and thereby heighten the quality and explanatory power of microscopy data is in publications.
Databáze: MEDLINE