Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan.

Autor:	Komatsu T; Aichi Prefectural Chuo Livestock Hygiene Service Center, Okazaki, Aichi, Japan., Ohya K; Faculty of Applied Biological Sciences, Gifu University, Gifu, Gifu, Japan.; United Graduate School of Veterinary Sciences, Gifu University, Gifu, Gifu, Japan., Ota A; Data Science Center, Division of Biological Science, Nara Institute of Science and Technology, Ikoma, Nara, Japan., Nishiuchi Y; Office of Academic Research and Industry-Government Collaboration, Hiroshima University, Higashi-Hiroshima, Hiroshima, Japan., Yano H; Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, Japan., Matsuo K; Kumamoto Prefectural Aso Public Health Center, Aso, Kumamoto, Japan., Odoi JO; United Graduate School of Veterinary Sciences, Gifu University, Gifu, Gifu, Japan., Suganuma S; Faculty of Applied Biological Sciences, Gifu University, Gifu, Gifu, Japan., Sawai K; Faculty of Applied Biological Sciences, Gifu University, Gifu, Gifu, Japan.; Viral Disease and Epidemiology Research Division, National Institute of Animal Health, National Agriculture Research Organization, Tsukuba, Ibaraki, Japan., Hasebe A; Toyama Prefectural Meat Inspection Center, Imizu, Toyama, Japan., Asai T; United Graduate School of Veterinary Sciences, Gifu University, Gifu, Gifu, Japan., Yanai T; Faculty of Applied Biological Sciences, Gifu University, Gifu, Gifu, Japan.; United Graduate School of Veterinary Sciences, Gifu University, Gifu, Gifu, Japan.; Hiwa Natural History Museum, Shobara, Hiroshima, Japan., Fukushi H; Faculty of Applied Biological Sciences, Gifu University, Gifu, Gifu, Japan.; United Graduate School of Veterinary Sciences, Gifu University, Gifu, Gifu, Japan., Wada T; Graduate School of Human Life Science, Osaka City University, Osaka, Osaka, Japan., Yoshida S; Clinical Research Center, National Hospital Organization Kinki-Chuo Chest Medical Center, Sakai, Osaka, Japan., Ito T; Laboratory of Proteome Research, Proteome Research Center, National Institutes of Biomedical Innovation, Health and Nutrition, Ibaraki, Osaka, Japan., Arikawa K; Department of Infectious Diseases, Kobe Institute of Health, Kobe, Hyogo, Japan., Kawai M; Graduate School of Human and Environmental Studies, Kyoto University, Kyoto, Kyoto, Japan., Ato M; Department of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases, Higashimurayama, Tokyo, Japan., Baughn AD; Department of Microbiology and Immunology, University of Minnesota Medical School, Minneapolis, Minnesota, USA., Iwamoto T; Department of Infectious Diseases, Kobe Institute of Health, Kobe, Hyogo, Japan., Maruyama F; Office of Academic Research and Industry-Government Collaboration, Hiroshima University, Higashi-Hiroshima, Hiroshima, Japan.; Project Research Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Higashi-Hiroshima, Hiroshima, Japan.; Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco, Chile.
Jazyk:	angličtina
Zdroj:	GigaByte (Hong Kong, China) [GigaByte] 2021 Nov 12; Vol. 2021, pp. gigabyte33. Date of Electronic Publication: 2021 Nov 12 (Print Publication: 2021).
DOI:	10.46471/gigabyte.33
Abstrakt:	Mycobacterium avium subsp. hominissuis (MAH) is one of the most important agents causing non-tuberculosis mycobacterial infection in humans and pigs. There have been advances in genome analysis of MAH from human isolates, but studies of isolates from pigs are limited despite its potential source of infection to human. Here, we obtained 30 draft genome sequences of MAH from pigs reared in Japan. The 30 draft genomes were 4,848,678-5,620,788 bp in length, comprising 4652-5388 coding genes and 46-75 (median: 47) tRNAs. All isolates had restriction modification-associated genes and 185-222 predicted virulence genes. Two isolates had tRNA arrays and one isolate had a clustered regularly interspaced short palindromic repeat (CRISPR) region. Our results will be useful for evaluation of the ecology of MAH by providing a foundation for genome-based epidemiological studies. Competing Interests: The authors declare that they have no competing interests. (© The Author(s) 2021.)
Databáze:	MEDLINE
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