Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution.

Autor:	Feng X; University of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA., Zheng J; University of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA., Irisarri I; University of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.; University of Goettingen, Campus Institute Data Science (CIDAS), Goldschmidstr. 1, 37077 Goettingen, Germany.; Section Phylogenomics, Centre for Molecular biodiversity Research, Leibniz Institute for the Analysis of Biodiversity Change (LIB), Zoological Museum Hamburg, Martin-Luther-King-Platz 3, 20146 Hamburg, Germany., Yu H; University of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE 68588, USA., Zheng B; University of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA., Ali Z; Nanyang Technological University, School of Biological Sciences, 60 Nanyang Drive, Singapore 637551, Singapore., de Vries S; University of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany., Keller J; Laboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, UPS, INP Toulouse, Castanet-Tolosan, 31326, France., Fürst-Jansen JMR; University of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany., Dadras A; University of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany., Zegers JMS; University of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany., Rieseberg TP; University of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany., Ashok AD; University of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany., Darienko T; University of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany., Bierenbroodspot MJ; University of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany., Gramzow L; University of Jena, Matthias Schleiden Institute / Genetics, 07743, Jena, Germany., Petroll R; Plant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany., Haas FB; Plant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany., Fernandez-Pozo N; Plant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.; Institute for Mediterranean and Subtropical Horticulture 'La Mayora' (UMA-CSIC)., Nousias O; University of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA., Li T; University of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA., Fitzek E; Computational Biology, Department of Biology, Center for Biotechnology, Bielefeld University, Bielefeld, Germany., Grayburn WS; Northern Illinois University, Molecular Core Lab, Department of Biological Sciences, DeKalb, IL 60115, USA., Rittmeier N; University of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Sternwartestraße 15, A-6020 Innsbruck, Austria., Permann C; University of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Sternwartestraße 15, A-6020 Innsbruck, Austria., Rümpler F; University of Jena, Matthias Schleiden Institute / Genetics, 07743, Jena, Germany., Archibald JM; Dalhousie University, Department of Biochemistry and Molecular Biology, 5850 College Street, Halifax NS B3H 4R2, Canada., Theißen G; University of Jena, Matthias Schleiden Institute / Genetics, 07743, Jena, Germany., Mower JP; University of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE 68588, USA., Lorenz M; University of Goettingen, Albrecht-von-Haller-Institute for Plant Sciences, Experimental Phycology and Culture Collection of Algae at Goettingen University (EPSAG), Nikolausberger Weg 18, 37073 Goettingen, Germany., Buschmann H; University of Applied Sciences Mittweida, Faculty of Applied Computer Sciences and Biosciences, Section Biotechnology and Chemistry, Molecular Biotechnology, Technikumplatz 17, 09648 Mittweida, Germany., von Schwartzenberg K; Universität Hamburg, Institute of Plant Science and Microbiology, Microalgae and Zygnematophyceae Collection Hamburg (MZCH) and Aquatic Ecophysiology and Phycology, Ohnhorststr. 18, 22609, Hamburg, Germany., Boston L; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Hayes RD; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Daum C; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Barry K; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Grigoriev IV; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA., Wang X; North China University of Science and Technology., Li FW; Boyce Thompson Institute, Ithaca, NY, USA.; Cornell University, Plant Biology Section, Ithaca, NY, USA., Rensing SA; Plant Cell Biology, Department of Biology, University of Marburg, Marburg, Germany.; University of Freiburg, Centre for Biological Signalling Studies (BIOSS), Freiburg, Germany., Ari JB; The Hebrew University of Jerusalem, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Rehovot 7610000, Israel., Keren N; The Hebrew University of Jerusalem, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Rehovot 7610000, Israel., Mosquna A; The Hebrew University of Jerusalem, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Rehovot 7610000, Israel., Holzinger A; University of Innsbruck, Department of Botany, Research Group Plant Cell Biology, Sternwartestraße 15, A-6020 Innsbruck, Austria., Delaux PM; Laboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, UPS, INP Toulouse, Castanet-Tolosan, 31326, France., Zhang C; University of Nebraska-Lincoln, Center for Plant Science Innovation, Lincoln, NE 68588, USA.; University of Nebraska-Lincoln, School of Biological Sciences, Lincoln, NE 68588, USA., Huang J; State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, China.; Department of Biology, East Carolina University, Greenville, NC, USA., Mutwil M; Nanyang Technological University, School of Biological Sciences, 60 Nanyang Drive, Singapore 637551, Singapore., de Vries J; University of Goettingen, Institute of Microbiology and Genetics, Department of Applied Bioinformatics, Goldschmidtstr. 1, 37077 Goettingen, Germany.; University of Goettingen, Campus Institute Data Science (CIDAS), Goldschmidstr. 1, 37077 Goettingen, Germany.; University of Goettingen, Goettingen Center for Molecular Biosciences (GZMB), Justus-von-Liebig-Weg 11, 37077 Goettingen, Germany., Yin Y; University of Nebraska-Lincoln, Department of Food Science and Technology, Lincoln, NE 68588, USA.
Jazyk:	angličtina
Zdroj:	BioRxiv : the preprint server for biology [bioRxiv] 2023 Feb 01. Date of Electronic Publication: 2023 Feb 01.
DOI:	10.1101/2023.01.31.526407
Abstrakt:	The filamentous and unicellular algae of the class Zygnematophyceae are the closest algal relatives of land plants. Inferring the properties of the last common ancestor shared by these algae and land plants allows us to identify decisive traits that enabled the conquest of land by plants. We sequenced four genomes of filamentous Zygnematophyceae (three strains of Zygnema circumcarinatum and one strain of Z. cylindricum ) and generated chromosome-scale assemblies for all strains of the emerging model system Z. circumcarinatum . Comparative genomic analyses reveal expanded genes for signaling cascades, environmental response, and intracellular trafficking that we associate with multicellularity. Gene family analyses suggest that Zygnematophyceae share all the major enzymes with land plants for cell wall polysaccharide synthesis, degradation, and modifications; most of the enzymes for cell wall innovations, especially for polysaccharide backbone synthesis, were gained more than 700 million years ago. In Zygnematophyceae, these enzyme families expanded, forming co-expressed modules. Transcriptomic profiling of over 19 growth conditions combined with co-expression network analyses uncover cohorts of genes that unite environmental signaling with multicellular developmental programs. Our data shed light on a molecular chassis that balances environmental response and growth modulation across more than 600 million years of streptophyte evolution. Competing Interests: Declaration of Interests The authors declare no competing interests.
Databáze:	MEDLINE
Externí odkaz:	Zobrazit plný text záznamu