Draft genome data of Prunus avium cv 'Stella'.

Autor: Sharpe RM; Department of Horticulture, Washington State University, Pullman WA 99164, United States., Killian B; Department of Horticulture, Washington State University, Pullman WA 99164, United States.; Department of Agriculture, African Christian University, Lusaka H985+XQ3, Zambia., Koepke T; Department of Horticulture, Washington State University, Pullman WA 99164, United States., Ghogare R; Department of Horticulture, Washington State University, Pullman WA 99164, United States., Oraguzie N; Irrigated Agriculture Research and Extension Center, Washington State University, Prosser, WA 99350, United States., Whiting M; Irrigated Agriculture Research and Extension Center, Washington State University, Prosser, WA 99350, United States., Meisel LA; Instituto de Nutrición y Tecnología de Los Alimentos (INTA), Universidad de Chile, El Libano 5524, 7830490, Macul, Santiago, Chile., Silva H; Facultad de Ciencias Agronómicas, Laboratorio de Genómica Funcional & Bioinformática, Universidad de Chile, Av. Santa Rosa 11315, 8820808, La Pintana, Santiago, Chile., Dhingra A; Department of Horticulture, Washington State University, Pullman WA 99164, United States.; Department of Horticultural Sciences, Texas A&M University, College Station, Texas 77843, United States.
Jazyk: angličtina
Zdroj: Data in brief [Data Brief] 2022 Sep 17; Vol. 45, pp. 108611. Date of Electronic Publication: 2022 Sep 17 (Print Publication: 2022).
DOI: 10.1016/j.dib.2022.108611
Abstrakt: Prunus avium cv. 'Stella' total cellular DNA was isolated from emerging leaf tissue and sequenced using Roche 454 GS FLX Titanium, and Illumina HiSeq 2000 High Throughput Sequencing (HTS) technologies. Sequence data were filtered and trimmed to retain nucleotides corresponding to Phred score 30, and assembled with CLC Genomics Workbench v.6.0.1. A total of 107,531 contigs were assembled with 185 scaffolds with a maximum length of 132,753 nucleotides and an N 50 value of 4,601. The average depth of coverage was 135.87 nucleotides with a median depth of coverage equal to 31.50 nucleotides. The draft 'Stella' genome presented here covers 77.8% of the estimated 352.9Mb P. avium genome and is expected to facilitate genetics and genomics research focused on identifying genes and quantitative trait loci (QTL) underlying important agronomic and consumer traits.
Competing Interests: The authors declare that they have no known competing financial interests or personal relationships which have, or could be perceived to have, influenced the work reported in this article.
(© 2022 The Authors.)
Databáze: MEDLINE
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