Population dynamics and genetic connectivity in recent chimpanzee history.

Autor:	Fontsere C; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain., Kuhlwilm M; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.; Department of Evolutionary Anthropology, University of Vienna, 1030 Vienna, Austria.; Human Evolution and Archaeological Sciences (HEAS), University of Vienna, 1030 Vienna, Austria., Morcillo-Suarez C; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain., Alvarez-Estape M; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain., Lester JD; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Gratton P; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.; Dipartimento di Biologia, Università di Roma 'Tor Vergata', Rome, Italy., Schmidt JM; UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, London, UK.; School of Biological Sciences, The University of Adelaide, Adelaide, Australia., Dieguez P; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.; German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Puschstrasse 4, 04103 Leipzig, Germany., Aebischer T; University of Fribourg, Fribourg, Switzerland., Álvarez-Varona P; Jane Goodall Institute Spain and Senegal, Dindefelo Biological Station, Dindefelo, Kedougou, Senegal., Agbor A; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Angedakin S; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Assumang AK; Department of Wildlife and Range Management, Faculty of Renewable Natural Resources, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana., Ayimisin EA; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Bailey E; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Barubiyo D; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Bessone M; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Carretero-Alonso A; Fundación Rainfer, Fuente el Saz de Jarama, Madrid, Spain., Chancellor R; Depts of Anthropology & Sociology and Psychology, West Chester University, West Chester, PA, USA., Cohen H; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.; Wild Chimpanzee Foundation (WCF), Deutscher Platz 6, 04103 Leipzig, Germany., Danquah E; Department of Wildlife and Range Management, Faculty of Renewable Natural Resources, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana., Deschner T; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Dunn A; Wildlife Conservation Society (WCS), 2300 Southern Boulevard, Bronx, NY 10460, USA., Dupain J; Antwerp Zoo Foundation-KMDA, Royal Zoological Society of Antwerp, Antwerp, Belgium., Egbe VE; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Feliu O; Research Department, Fundació MONA, Riudellots de la Selva, Girona, Spain., Goedmakers A; Chimbo Foundation, Huningspaed 6. 8567 LL Oudemirdum, the Netherlands., Granjon AC; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Head J; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Hedwig D; The Elephant Listening Project, K. Lisa Yang Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, 159 Sapsucker Woods Road, Ithaca, NY 14850, USA., Hermans V; KMDA, Centre for Research and Conservation, Royal Zoological Society of Antwerp, Koningin Astridplein 20-26, B-2018 Antwerp, Belgium., Hernandez-Aguilar RA; Jane Goodall Institute Spain and Senegal, Dindefelo Biological Station, Dindefelo, Kedougou, Senegal.; Serra Húnter Professor, Department of Social Psychology and Quantitative Psychology, University of Barcelona, Barcelona, Spain., Imong I; Wildlife Conservation Society (WCS), 2300 Southern Boulevard, Bronx, NY 10460, USA., Jones S; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.; RSPB Centre of Conservation Science, David Attenborough Building, Pembroke Street, Cambridge, CB2 3QZ, UK., Junker J; German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Puschstrasse 4, 04103 Leipzig, Germany., Kadam P; Greater Mahale Ecosystem Research and Conservation Project (GMERC, LTD), Mpanda, Tanzania., Kaiser M; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Kambere M; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Kambale MV; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Kalan AK; Greater Mahale Ecosystem Research and Conservation Project (GMERC, LTD), Mpanda, Tanzania.; Department of Anthropology, University of Victoria, BC V8P 5C2, Canada., Kienast I; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Kujirakwinja D; Wildlife Conservation Society (WCS), 2300 Southern Boulevard, Bronx, NY 10460, USA., Langergraber K; School of Human Evolution and Social Change, Arizona State University, 900 Cady Mall, Tempe, AZ 85287, USA.; Institute of Human Origins, Arizona State University, 900 Cady Mall, Tempe, AZ 85287, USA.; Arizona State University, PO Box 872402, Tempe, AZ 85287-2402, USA., Lapuente J; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Larson B; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Laudisoit A; EcoHealth Alliance, 520 Eighth Ave, Suite 1200, New York, NY 10018, USA.; Evolutionary Ecology group (EVECO), Campus Drie Eiken, Universiteitsplein 1, 2610 Wilrijk, Belgium., Lee K; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.; School of Human Evolution and Social Change, Arizona State University, 900 Cady Mall, Tempe, AZ 85287, USA., Llana M; Jane Goodall Institute Spain and Senegal, Dindefelo Biological Station, Dindefelo, Kedougou, Senegal., Llorente M; Research Department, Fundació MONA, Riudellots de la Selva, Girona, Spain.; Serra Húnter Fellow, Departament de Psicologia, Facultat d'Educació i Psicologia, Universitat de Girona, Girona, Spain., Marrocoli S; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Morgan D; Lester E. Fisher Center for the Study and Conservation of Apes, Lincoln Park Zoo, 2001 North Clark Street, Chicago, IL 60614, USA., Mulindahabi F; Wildlife Conservation Society (WCS), 2300 Southern Boulevard, Bronx, NY 10460, USA., Murai M; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Neil E; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Nicholl S; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Nixon S; Chester Zoo, Field Programmes, Cedar House, Caughall Road, Upton-by Chester, CH2 1LH, UK., Normand E; Wild Chimpanzee Foundation (WCF), 23BP238 Abidjan, Côte d'Ivoire., Orbell C; Panthera, 8 W 40th St., New York, NY 10018, USA., Ormsby LJ; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Pacheco L; Centres Molina, Carrer de Lorena, 61, 08042 Barcelona, Spain., Piel A; Greater Mahale Ecosystem Research and Conservation Project (GMERC, LTD), Mpanda, Tanzania.; University College London, Department of Anthropology, 14 Taviton Street, London, WC1H 0BW, UK., Riera L; Research Department, Fundació MONA, Riudellots de la Selva, Girona, Spain., Robbins MM; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Rundus A; Department of Psychology, West Chester University, West Chester, PA, USA., Sanz C; Washington University in Saint Louis, Department of Anthropology, One Brookings Drive, St. Louis, MO 63130, USA.; Wildlife Conservation Society, Congo Program, Brazzaville, Republic of Congo., Sciaky L; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Sommer V; University College London, Department of Anthropology, 14 Taviton Street, London, WC1H 0BW, UK.; Primate Project, Serti, Taraba State 663001, Nigeria., Stewart FA; Greater Mahale Ecosystem Research and Conservation Project (GMERC, LTD), Mpanda, Tanzania.; University College London, Department of Anthropology, 14 Taviton Street, London, WC1H 0BW, UK.; School of Biological & Environmental Sciences, Liverpool John Moores University, James Parsons Building, Byrom Street, Liverpool L3 3AF, UK., Tagg N; KMDA, Centre for Research and Conservation, Royal Zoological Society of Antwerp, Koningin Astridplein 20-26, B-2018 Antwerp, Belgium., Tédonzong LR; KMDA, Centre for Research and Conservation, Royal Zoological Society of Antwerp, Koningin Astridplein 20-26, B-2018 Antwerp, Belgium., Ton E; Chimbo Foundation, Huningspaed 6. 8567 LL Oudemirdum, the Netherlands., van Schijndel J; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.; Chimbo Foundation, Huningspaed 6. 8567 LL Oudemirdum, the Netherlands., Vergnes V; Wild Chimpanzee Foundation (WCF), 23BP238 Abidjan, Côte d'Ivoire., Wessling EG; Department of Human Evolutionary Biology, Harvard University, 11 Divinity Avenue, Cambridge, MA 02138, USA., Willie J; KMDA, Centre for Research and Conservation, Royal Zoological Society of Antwerp, Koningin Astridplein 20-26, B-2018 Antwerp, Belgium.; Terrestrial Ecology Unit (TEREC), Department of Biology, Ghent University (UGent), K.L. Ledeganckstraat 35, 9000 Ghent, Belgium., Wittig RM; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.; Taï Chimpanzee Project, Centre Suisse de Recherches Scientifiques, BP 1301, Abidjan 01, Côte d'Ivoire., Yuh YG; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.; Department of Geography, Planning and Environmental Studies, University of Concordia, 1455 Boulevard de Maisonneuve Ouest, Montréal, QC H3G 1M8, Canada., Yurkiw K; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Zuberbuehler K; Université de Neuchâtel, Institut de Biologie, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.; School of Psychology and Neuroscience, University of St. Andrews, St. Andrews, UK., Hecht J; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain., Vigilant L; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Boesch C; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany., Andrés AM; UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, London, UK., Hughes DA; MRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK.; Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK., Kühl HS; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.; German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Puschstrasse 4, 04103 Leipzig, Germany., Lizano E; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.; Institut Catala de Paleontologia Miquel Crusafont, Universitat Autonoma de Barcelona, Cerdanyola del Vallès, Spain., Arandjelovic M; Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.; German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Puschstrasse 4, 04103 Leipzig, Germany., Marques-Bonet T; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain.; Institut Catala de Paleontologia Miquel Crusafont, Universitat Autonoma de Barcelona, Cerdanyola del Vallès, Spain.; Catalan Institution of Research and Advanced Studies (ICREA), Barcelona, Spain.
Jazyk:	angličtina
Zdroj:	Cell genomics [Cell Genom] 2022 Jun 08; Vol. 2 (6), pp. None. Date of Electronic Publication: 2022 Jun 08.
DOI:	10.1016/j.xgen.2022.100133
Abstrakt:	Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees ( Pan troglodytes ) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos ( Pan paniscus ). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. Competing Interests: The authors declare no competing interests. (© 2022 The Authors.)
Databáze:	MEDLINE
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