PyRAT: An Open-Source Python Library for Animal Behavior Analysis.
| Autor: | De Almeida TF; Post Graduation Program in Neuroengineering, Santos Dumont Institute, Edmond and Lily Safra International Institute of Neuroscience, Macaíba, Brazil., Spinelli BG; Post Graduation Program in Neuroengineering, Santos Dumont Institute, Edmond and Lily Safra International Institute of Neuroscience, Macaíba, Brazil., Hypolito Lima R; Post Graduation Program in Neuroengineering, Santos Dumont Institute, Edmond and Lily Safra International Institute of Neuroscience, Macaíba, Brazil., Gonzalez MC; Post Graduation Program in Neuroengineering, Santos Dumont Institute, Edmond and Lily Safra International Institute of Neuroscience, Macaíba, Brazil., Rodrigues AC; Post Graduation Program in Neuroengineering, Santos Dumont Institute, Edmond and Lily Safra International Institute of Neuroscience, Macaíba, Brazil. |
|---|---|
| Jazyk: | angličtina |
| Zdroj: | Frontiers in neuroscience [Front Neurosci] 2022 May 09; Vol. 16, pp. 779106. Date of Electronic Publication: 2022 May 09 (Print Publication: 2022). |
| DOI: | 10.3389/fnins.2022.779106 |
| Abstrakt: | Here we developed an open-source Python-based library called Python rodent Analysis and Tracking (PyRAT). Our library analyzes tracking data to classify distinct behaviors, estimate traveled distance, speed and area occupancy. To classify and cluster behaviors, we used two unsupervised algorithms: hierarchical agglomerative clustering and t-distributed stochastic neighbor embedding (t-SNE). Finally, we built algorithms that associate the detected behaviors with synchronized neural data and facilitate the visualization of this association in the pixel space. PyRAT is fully available on GitHub: https://github.com/pyratlib/pyrat. Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. (Copyright © 2022 De Almeida, Spinelli, Hypolito Lima, Gonzalez and Rodrigues.) |
| Databáze: | MEDLINE |
| Externí odkaz: |
|