Complete mitochondrial genome sequencing and preliminary phylogenetic analysis of Chromis notata .
| Autor: | Jeon JH; Department of Marine Molecular Bioscience, Gangneung-Wonju National University, Gangneung, Korea., Son HH; Department of Marine Molecular Bioscience, Gangneung-Wonju National University, Gangneung, Korea., Joo SS; Department of Marine Molecular Bioscience, Gangneung-Wonju National University, Gangneung, Korea., Jin HJ; Department of Marine Molecular Bioscience, Gangneung-Wonju National University, Gangneung, Korea., Jin DH; Department of Marine Molecular Bioscience, Gangneung-Wonju National University, Gangneung, Korea. |
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| Jazyk: | angličtina |
| Zdroj: | Mitochondrial DNA. Part B, Resources [Mitochondrial DNA B Resour] 2022 Apr 20; Vol. 7 (4), pp. 671-672. Date of Electronic Publication: 2022 Apr 20 (Print Publication: 2022). |
| DOI: | 10.1080/23802359.2021.1987175 |
| Abstrakt: | Chromis notata (Temminck and Schlegel, 1843), commonly known as the pearl-spot chromis, is a damselfish that inhabits the northwestern region of the Pacific Ocean and the East China Sea. Interestingly, C. notata has been found to have morphological variations depending on the geographical area of collection. However, because there are insufficient molecular studies on C. notata , in this study, we determined its complete mitochondrial genome using PCR and phylogenetic analyses. The mitochondrial genome of C. notata was found to be 16,600 bp long, which consisted of 22 tRNA genes, 2 rRNA genes, 13 protein-coding genes, and 1 control region (D-loop). The base composition was 27.6% A, 24.8% T, 31.0% C, and 16.6% G. A phylogenetic tree reconstructed with the neighbor-joining method depicted a clone relationship with seven species of family Pomacentridae and our previous study based on CO1 gene sequences. The complete mitochondrial genome is a valuable resource in classifying and conserving C. notata . Competing Interests: No potential conflict of interest was reported by the author(s). (© 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.) |
| Databáze: | MEDLINE |
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