| Autor: |
Kopczynski D; Institute of Analytical Chemistry, University of Vienna, 1090 Vienna, Austria., Hoffmann N; Center for Biotechnology (CeBiTec), Bielefeld University, 33594 Bielefeld, Germany., Peng B; Division of Rheumatology, Department of Medicine, Solna, Karolinska Institutet and Karolinska University Hospital, 17176 Stockholm, Sweden., Liebisch G; Institute of Clinical Chemistry and Laboratory Medicine, Regensburg University Hospital, 93053 Regensburg, Germany., Spener F; Department of Molecular Biosciences, University of Graz, 8010 Graz, Austria.; Division of Molecular Biology and Biochemistry, Gottfried Schatz Research Center, Medical University of Graz, 8036 Graz, Austria., Ahrends R; Institute of Analytical Chemistry, University of Vienna, 1090 Vienna, Austria. |
| Abstrakt: |
Goslin is the first grammar-based computational library for the recognition/parsing and normalization of lipid names following the hierarchical lipid shorthand nomenclature. The new version Goslin 2.0 implements the latest nomenclature and adds an additional grammar to recognize systematic IUPAC-IUB fatty acyl names as stored, e.g., in the LIPID MAPS database and is perfectly suited to update lipid names in LIPID MAPS or HMDB databases to the latest nomenclature. Goslin 2.0 is available as a standalone web application with a REST API as well as C++, C#, Java, Python 3, and R libraries. Importantly, it can be easily included in lipidomics tools and scripts providing direct access to translation functions. All implementations are open source. |
