Sustainable computational science: the ReScience initiative.

Autor:	Rougier NP; INRIA Bordeaux Sud-Ouest, Talence, France., Hinsen K; Centre de Biophysique Moléculaire UPR4301, CNRS, Orléans, France., Alexandre F; INRIA Bordeaux Sud-Ouest, Talence, France., Arildsen T; Department of Electronic Systems, Technical Faculty of IT and Design, Aalborg University, Aalborg, Denmark., Barba LA; Department of Mechanical and Aerospace Engineering, The George Washington University, Washington, D.C., USA., Benureau FCY; INRIA Bordeaux Sud-Ouest, Talence, France., Brown CT; Department of Population Health and Reproduction, University of California Davis, Davis, CA, USA., de Buyl P; Instituut voor Theoretische Fysica, KU Leuven, Leuven, Belgium., Caglayan O; Laboratoire d'Informatique (LIUM), Le Mans University, Le Mans, France., Davison AP; UNIC FRE 3693, CNRS, Gif-sur-Yvette, France., Delsuc MA; Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France., Detorakis G; Department of Cognitive Sciences, University of California Irvine, Irvine, CA, USA., Diem AK; Computational Engineering and Design, University of Southampton, Southampton, United Kingdom., Drix D; Humboldt Universität zu Berlin, Berlin, Germany., Enel P; Department of Neuroscience, Mount Sinai School of Medicine, New York, NY, USA., Girard B; Institute of Intelligent Systems and Robotics, Sorbonne Universités - UPMC Univ Paris 06 - CNRS, Paris, France., Guest O; Experimental Psychology, University College London, London, Greater London, United Kingdom., Hall MG; UCL Great Ormond St Institute of Child Health, London, United Kingdom., Henriques RN; Champalimaud Centre for the Unknown, Champalimaud Neuroscience Program, Lisbon, Portugal., Hinaut X; INRIA Bordeaux Sud-Ouest, Talence, France., Jaron KS; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland., Khamassi M; Institute of Intelligent Systems and Robotics, Sorbonne Universités - UPMC Univ Paris 06 - CNRS, Paris, France., Klein A; Independent scholar, Enschede, The Netherlands., Manninen T; BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland., Marchesi P; Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands., McGlinn D; Department of Biology, College of Charleston, Charleston, SC, USA., Metzner C; Centre for Computer Science and Informatics Research, University of Hertfordshire, Hatfield, United Kingdom., Petchey O; Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland., Plesser HE; Faculty of Science and Technology, Norwegian University of Life Sciences, Aas, Norway., Poisot T; Département de Sciences Biologiques, Université de Montréal, Montréal, QC, Canada., Ram K; Berkeley Institute for Data Science, University of California, Berkeley, CA, USA., Ram Y; Department of Biology, Stanford University, Stanford, CA, USA., Roesch E; Centre for Integrative Neuroscience, University of Reading, Reading, United Kingdom., Rossant C; Institute of Neurology, University College London, London, United Kingdom., Rostami V; Institute of Neuroscience & Medicine, Juelich Forschungszentrum, Jülich, Germany., Shifman A; Department of Biology, University of Ottawa, Ottawa, Ontario, Canada., Stachelek J; Department of Fisheries and Wildlife, Michigan State University, East Lansing, MI, USA., Stimberg M; Sorbonne Universités/UPMC Univ Paris 06/INSERM/CNRS/Institut de la Vision, Paris, France., Stollmeier F; Max Planck Institute for Dynamics and Self-Organization, Göttingen, Lower Saxony, Germany., Vaggi F; Amazon, Seattle, WA, USA., Viejo G; Institute of Intelligent Systems and Robotics, Sorbonne Universités - UPMC Univ Paris 06 - CNRS, Paris, France., Vitay J; Department of Computer Science, Chemnitz University of Technology, Chemnitz, Saxony, Germany., Vostinar AE; Department of Computer Science, Grinnell College, Grinnell, IA, USA., Yurchak R; Symerio, Palaiseau, France., Zito T; Neural Information Processing Group, Eberhard Karls Universität Tübingen, Tübingen, Germany.
Jazyk:	angličtina
Zdroj:	PeerJ. Computer science [PeerJ Comput Sci] 2017 Dec 18; Vol. 3, pp. e142. Date of Electronic Publication: 2017 Dec 18 (Print Publication: 2017).
DOI:	10.7717/peerj-cs.142
Abstrakt:	Computer science offers a large set of tools for prototyping, writing, running, testing, validating, sharing and reproducing results; however, computational science lags behind. In the best case, authors may provide their source code as a compressed archive and they may feel confident their research is reproducible. But this is not exactly true. James Buckheit and David Donoho proposed more than two decades ago that an article about computational results is advertising, not scholarship. The actual scholarship is the full software environment, code, and data that produced the result. This implies new workflows, in particular in peer-reviews. Existing journals have been slow to adapt: source codes are rarely requested and are hardly ever actually executed to check that they produce the results advertised in the article. ReScience is a peer-reviewed journal that targets computational research and encourages the explicit replication of already published research, promoting new and open-source implementations in order to ensure that the original research can be replicated from its description. To achieve this goal, the whole publishing chain is radically different from other traditional scientific journals. ReScience resides on GitHub where each new implementation of a computational study is made available together with comments, explanations, and software tests. Competing Interests: Federico Vaggi is an employee of Amazon, Inc., Roman Yurchak is an employee of Symerio, and C. Titus Brown and Nicolas P. Rougier are Academic Editors for PeerJ. (©2017 Rougier et al.)
Databáze:	MEDLINE
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