Generic acquisition protocol for quantitative MRI of the spinal cord.

Autor:	Cohen-Adad J; NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Quebec, Canada. jcohen@polymtl.ca.; Functional Neuroimaging Unit, CRIUGM, University of Montreal, Montreal, Quebec, Canada. jcohen@polymtl.ca.; Mila-Quebec AI Institute, Montreal, Quebec, Canada. jcohen@polymtl.ca., Alonso-Ortiz E; NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Quebec, Canada., Abramovic M; Department of Radiology, Swiss Paraplegic Centre, Nottwil, Switzerland., Arneitz C; Department of Radiology, Swiss Paraplegic Centre, Nottwil, Switzerland., Atcheson N; Centre for Advanced Imaging, The University of Queensland, Brisbane, Queensland, Australia., Barlow L; Department of Radiology, University of British Columbia, Vancouver, British Columbia, Canada., Barry RL; Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA.; Department of Radiology, Harvard Medical School, Boston, MA, USA.; Harvard-Massachusetts Institute of Technology Health Sciences & Technology, Cambridge, MA, USA., Barth M; School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, Queensland, Australia., Battiston M; NMR Research Unit, Queen Square MS Centre, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, UK., Büchel C; Department of Systems Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany., Budde M; Department of Neurosurgery, Medical College of Wisconsin, Milwaukee, WI, USA., Callot V; Aix-Marseille Univ, CNRS, CRMBM, Marseille, France.; APHM, Hopital Universitaire Timone, CEMEREM, Marseille, France., Combes AJE; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA., De Leener B; Department of Computer and Software Engineering, Polytechnique Montreal, Montreal, Quebec, Canada.; CHU Sainte-Justine Research Centre, Montreal, Quebec, Canada., Descoteaux M; Centre de Recherche CHUS, CIMS, Sherbrooke, Quebec, Canada.; Sherbrooke Connectivity Imaging Lab (SCIL), Computer Science department, Université de Sherbrooke, Sherbrooke, Quebec, Canada., de Sousa PL; Université de Strasbourg, CNRS, ICube, Strasbourg, France., Dostál M; UHB - University Hospital Brno and Masaryk University, Department of Radiology and Nuclear Medicine, Brno, Czech Republic., Doyon J; McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada., Dvorak A; Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia, Canada., Eippert F; Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany., Epperson KR; Richard M. Lucas Center, Stanford University School of Medicine, Stanford, CA, USA., Epperson KS; Richard M. Lucas Center, Stanford University School of Medicine, Stanford, CA, USA., Freund P; Spinal Cord Injury Center Balgrist, University of Zurich, Zurich, Switzerland., Finsterbusch J; Department of Systems Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany., Foias A; NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Quebec, Canada., Fratini M; Institute of Nanotechnology, CNR, Rome, Italy.; IRCCS Santa Lucia Foundation, Rome, Italy., Fukunaga I; Department of Radiology, Juntendo University School of Medicine, Tokyo, Japan., Wheeler-Kingshott CAMG; NMR Research Unit, Queen Square MS Centre, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, UK.; Department of Brain and Behavioural Sciences, University of Pavia, Pavia, Italy.; Brain MRI 3T Research Centre, IRCCS Mondino Foundation, Pavia, Italy., Germani G; Brain MRI 3T Research Centre, IRCCS Mondino Foundation, Pavia, Italy., Gilbert G; MR Clinical Science, Philips Healthcare, Markham, Ontario, Canada., Giove F; IRCCS Santa Lucia Foundation, Rome, Italy.; CREF - Museo storico della fisica e Centro studi e ricerche Enrico Fermi, Rome, Italy., Gros C; NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Quebec, Canada.; Centre for Advanced Imaging, The University of Queensland, Brisbane, Queensland, Australia., Grussu F; NMR Research Unit, Queen Square MS Centre, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, UK.; Radiomics Group, Vall d'Hebron Institute of Oncology, Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain., Hagiwara A; Department of Radiology, Juntendo University School of Medicine, Tokyo, Japan., Henry PG; Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA., Horák T; Multimodal and functional imaging laboratory, Central European Institute of Technology (CEITEC), Brno, Czech Republic., Hori M; Department of Radiology, Toho University Omori Medical Center, Tokyo, Japan., Joers J; Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA., Kamiya K; Department of Radiology, the University of Tokyo, Tokyo, Japan., Karbasforoushan H; Interdepartmental Neuroscience Program, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.; Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University, Stanford, CA, USA., Keřkovský M; UHB - University Hospital Brno and Masaryk University, Department of Radiology and Nuclear Medicine, Brno, Czech Republic., Khatibi A; McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.; Centre of Precision Rehabilitation for Spinal Pain (CPR Spine), School of Sport, Exercise and Rehabilitation Sciences, College of Life and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, UK., Kim JW; BioMedical Engineering and Imaging Institute (BMEII), Department of Radiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Kinany N; Institute of Bioengineering/Center for Neuroprosthetics, Ecole Polytechnique Fédérale de Lausanne, Geneva, Switzerland.; Department of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland., Kitzler H; Institute of Diagnostic and Interventional Neuroradiology, Carl Gustav Carus University Hospital, Technische Universität Dresden, Dresden, Germany., Kolind S; Department of Radiology, University of British Columbia, Vancouver, British Columbia, Canada.; Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia, Canada.; Department of Medicine (Neurology), University of British Columbia, Vancouver, British Columbia, Canada., Kong Y; CAS Key Laboratory of Behavioral Science, Institute of Psychology, Chinese Academy of Sciences, Beijing, China.; Department of Psychology, University of Chinese Academy of Sciences, Beijing, China.; Wellcome Centre For Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK., Kudlička P; Multimodal and functional imaging laboratory, Central European Institute of Technology (CEITEC), Brno, Czech Republic., Kuntke P; Institute of Diagnostic and Interventional Neuroradiology, Carl Gustav Carus University Hospital, Technische Universität Dresden, Dresden, Germany., Kurniawan ND; Centre for Advanced Imaging, The University of Queensland, Brisbane, Queensland, Australia., Kusmia S; CUBRIC, Cardiff University, Wales, UK.; Centre for Medical Image Computing (CMIC), Medical Physics and Biomedical Engineering Department, University College London, London, UK.; Epilepsy Society MRI Unit, Chalfont St Peter, UK., Labounek R; Division of Clinical Behavioral Neuroscience, Department of Pediatrics, University of Minnesota, Minneapolis, MN, USA.; Departments of Neurology and Biomedical Engineering, University Hospital Olomouc, Olomouc, Czech Republic., Laganà MM; IRCCS Fondazione Don Carlo Gnocchi ONLUS, Milan, Italy., Laule C; Departments of Radiology, Pathology & Laboratory Medicine, Physics & Astronomy; International Collaboration on Repair Discoveries (ICORD), University of British Columbia, Vancouver, British Columbia, Canada., Law CS; Division of Pain Medicine, Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Stanford, CA, USA., Lenglet C; Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA., Leutritz T; Department of Neurophysics, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany., Liu Y; Department of Radiology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.; Tiantan Image Research Center, China National Clinical Research Center for Neurological Diseases, Beijing, China., Llufriu S; Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases, Hospital Clinic Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS) and Universitat de Barcelona, Barcelona, Spain., Mackey S; Division of Pain Medicine, Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Stanford, CA, USA., Martinez-Heras E; Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases, Hospital Clinic Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS) and Universitat de Barcelona, Barcelona, Spain., Mattera L; Fondation Campus Biotech Genève, Geneva, Switzerland., Nestrasil I; Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN, USA.; Division of Clinical Behavioral Neuroscience, Department of Pediatrics, University of Minnesota, Minneapolis, MN, USA., O'Grady KP; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Radiology, Vanderbilt University Medical Center, Nashville, TN, USA., Papinutto N; UCSF Weill Institute for Neurosciences, Department of Neurology, University of California San Francisco, San Francisco, CA, USA., Papp D; NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, Quebec, Canada.; Wellcome Centre For Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK., Pareto D; Neuroradiology Section, Vall d'Hebron University Hospital, Barcelona, Spain., Parrish TB; Interdepartmental Neuroscience Program, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA., Pichiecchio A; Department of Brain and Behavioural Sciences, University of Pavia, Pavia, Italy.; Brain MRI 3T Research Centre, IRCCS Mondino Foundation, Pavia, Italy., Prados F; NMR Research Unit, Queen Square MS Centre, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, UK.; Centre for Medical Image Computing (CMIC), Medical Physics and Biomedical Engineering Department, University College London, London, UK.; E-health Centre, Universitat Oberta de Catalunya, Barcelona, Spain., Rovira À; Neuroradiology Section, Vall d'Hebron University Hospital, Barcelona, Spain., Ruitenberg MJ; School of Biomedical Sciences, Faculty of Medicine, The University of Queensland, Brisbane, Queensland, Australia., Samson RS; NMR Research Unit, Queen Square MS Centre, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, UK., Savini G; Brain MRI 3T Research Centre, IRCCS Mondino Foundation, Pavia, Italy., Seif M; Spinal Cord Injury Center Balgrist, University of Zurich, Zurich, Switzerland.; Department of Neurophysics, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany., Seifert AC; BioMedical Engineering and Imaging Institute (BMEII), Department of Radiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Smith AK; Wellcome Centre For Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK., Smith SA; Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Radiology, Vanderbilt University Medical Center, Nashville, TN, USA., Smith ZA; University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA., Solana E; Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases, Hospital Clinic Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS) and Universitat de Barcelona, Barcelona, Spain., Suzuki Y; Department of Radiology, the University of Tokyo, Tokyo, Japan., Tackley G; CUBRIC, Cardiff University, Wales, UK., Tinnermann A; Department of Systems Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany., Valošek J; Department of Neurology, Faculty of Medicine and Dentistry, Palacký University and University Hospital Olomouc, Olomouc, Czech Republic., Van De Ville D; Institute of Bioengineering/Center for Neuroprosthetics, Ecole Polytechnique Fédérale de Lausanne, Geneva, Switzerland.; Department of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland., Yiannakas MC; NMR Research Unit, Queen Square MS Centre, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, UK., Weber KA 2nd; Division of Pain Medicine, Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Stanford, CA, USA., Weiskopf N; Department of Neurophysics, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.; Felix Bloch Institute for Solid State Physics, Faculty of Physics and Earth Sciences, Leipzig University, Leipzig, Germany., Wise RG; CUBRIC, Cardiff University, Wales, UK.; Institute for Advanced Biomedical Technologies, Department of Neuroscience, Imaging and Clinical Sciences, 'G. D'Annunzio University' of Chieti-Pescara, Chieti, Italy., Wyss PO; Department of Radiology, Swiss Paraplegic Centre, Nottwil, Switzerland., Xu J; BioMedical Engineering and Imaging Institute (BMEII), Department of Radiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Jazyk:	angličtina
Zdroj:	Nature protocols [Nat Protoc] 2021 Oct; Vol. 16 (10), pp. 4611-4632. Date of Electronic Publication: 2021 Aug 16.
DOI:	10.1038/s41596-021-00588-0
Abstrakt:	Quantitative spinal cord (SC) magnetic resonance imaging (MRI) presents many challenges, including a lack of standardized imaging protocols. Here we present a prospectively harmonized quantitative MRI protocol, which we refer to as the spine generic protocol, for users of 3T MRI systems from the three main manufacturers: GE, Philips and Siemens. The protocol provides guidance for assessing SC macrostructural and microstructural integrity: T1-weighted and T2-weighted imaging for SC cross-sectional area computation, multi-echo gradient echo for gray matter cross-sectional area, and magnetization transfer and diffusion weighted imaging for assessing white matter microstructure. In a companion paper from the same authors, the spine generic protocol was used to acquire data across 42 centers in 260 healthy subjects. The key details of the spine generic protocol are also available in an open-access document that can be found at https://github.com/spine-generic/protocols . The protocol will serve as a starting point for researchers and clinicians implementing new SC imaging initiatives so that, in the future, inclusion of the SC in neuroimaging protocols will be more common. The protocol could be implemented by any trained MR technician or by a researcher/clinician familiar with MRI acquisition. (© 2021. The Author(s), under exclusive licence to Springer Nature Limited.)
Databáze:	MEDLINE
Externí odkaz:	Full text from SpringerLink