ChloroKB, a cell metabolism reconstruction of the model plant Arabidopsis thaliana.

Autor: Gloaguen P; Université Grenoble Alpes, CNRS, CEA, INRAe, IRIG-LPCV, UMR5168, 38000 Grenoble, France., Vandenbrouck Y; Université Grenoble Alpes, Inserm, CEA, IRIG-BGE, U1038, 38000, Grenoble, France., Joyard J; Université Grenoble Alpes, CNRS, CEA, INRAe, IRIG-LPCV, UMR5168, 38000 Grenoble, France., Curien G; Université Grenoble Alpes, CNRS, CEA, INRAe, IRIG-LPCV, UMR5168, 38000 Grenoble, France.
Jazyk: angličtina
Zdroj: Comptes rendus biologies [C R Biol] 2021 Jul 02; Vol. 344 (2), pp. 157-163. Date of Electronic Publication: 2021 Jul 02.
DOI: 10.5802/crbiol.49
Abstrakt: Can we understand how plant cell metabolism really works? An integrated large-scale modelling of plant metabolism predictive model would make possible to analyse the impact of disturbances in environmental conditions on cellular functioning and diversity of plant-made molecules of interest. ChloroKB, a Web application initially developed for exploration of Arabidopsis chloroplast metabolic network now covers Arabidopsis mesophyll cell metabolism. Interconnected metabolic maps show subcellular compartments, metabolites, proteins, complexes, reactions, and transport. Data in ChloroKB have been structured to allow for mathematical modelling and will be used as a reference for modelling work dedicated to a particular issue.
Databáze: MEDLINE