Global Advances in Tomato Virome Research: Current Status and the Impact of High-Throughput Sequencing.

Autor:	Rivarez MPS; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.; Jožef Stefan International Postgraduate School, Ljubljana, Slovenia., Vučurović A; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.; Faculty of Agriculture, University of Belgrade, Belgrade, Serbia., Mehle N; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia., Ravnikar M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.; School for Viticulture and Enology, University of Nova Gorica, Nova Gorica, Slovenia., Kutnjak D; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Jazyk:	angličtina
Zdroj:	Frontiers in microbiology [Front Microbiol] 2021 May 21; Vol. 12, pp. 671925. Date of Electronic Publication: 2021 May 21 (Print Publication: 2021).
DOI:	10.3389/fmicb.2021.671925
Abstrakt:	Viruses cause a big fraction of economically important diseases in major crops, including tomato. In the past decade (2011-2020), many emerging or re-emerging tomato-infecting viruses were reported worldwide. In this period, 45 novel viral species were identified in tomato, 14 of which were discovered using high-throughput sequencing (HTS). In this review, we first discuss the role of HTS in these discoveries and its general impact on tomato virome research. We observed that the rate of tomato virus discovery is accelerating in the past few years due to the use of HTS. However, the extent of the post-discovery characterization of viruses is lagging behind and is greater for economically devastating viruses, such as the recently emerged tomato brown rugose fruit virus. Moreover, many known viruses still cause significant economic damages to tomato production. The review of databases and literature revealed at least 312 virus, satellite virus, or viroid species (in 22 families and 39 genera) associated with tomato, which is likely the highest number recorded for any plant. Among those, here, we summarize the current knowledge on the biology, global distribution, and epidemiology of the most important species. Increasing knowledge on tomato virome and employment of HTS to also study viromes of surrounding wild plants and environmental samples are bringing new insights into the understanding of epidemiology and ecology of tomato-infecting viruses and can, in the future, facilitate virus disease forecasting and prevention of virus disease outbreaks in tomato. Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. (Copyright © 2021 Rivarez, Vučurović, Mehle, Ravnikar and Kutnjak.)
Databáze:	MEDLINE
Externí odkaz:	Zobrazit plný text záznamu