Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.

Autor: Vangay P; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Burgin J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Johnston A; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA., Beck KL; IBM Almaden Research Center, San Jose, California, USA., Berrios DC; NASA Ames Research Center, Moffett Field, California, USA., Blumberg K; Biosystems Engineering Department, University of Arizona, Tucson, Arizona, USA., Canon S; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Chain P; Los Alamos National Laboratory, Los Alamos, New Mexico, USA., Chandonia JM; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Christianson D; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Costes SV; NASA Ames Research Center, Moffett Field, California, USA., Damerow J; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Duncan WD; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Dundore-Arias JP; California State University, Monterey Bay, California, USA., Fagnan K; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Galazka JM; NASA Ames Research Center, Moffett Field, California, USA., Gibbons SM; Institute for Systems Biology, Seattle, Washington, USA.; Department of Bioengineering, University of Washington, Seattle, Washington, USA., Hays D; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Hervey J; Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, DC, USA., Hu B; Los Alamos National Laboratory, Los Alamos, New Mexico, USA., Hurwitz BL; Biosystems Engineering Department, University of Arizona, Tucson, Arizona, USA., Jaiswal P; Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA., Joachimiak MP; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Kinkel L; Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota, USA., Ladau J; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Martin SL; Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA., McCue LA; Pacific Northwest National Laboratory, Richland, Washington, USA., Miller K; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Mouncey N; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Mungall C; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Pafilis E; Institute of Marine Biology Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece., Reddy TBK; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Richardson L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Roux S; Department of Energy Joint Genome Institute, Berkeley, California, USA., Schriml LM; University of Maryland School of Medicine, Institute for Genome Sciences, Baltimore, Maryland, USA, Shaffer JP; Department of Pediatrics, School of Medicine, University of California, San Diego, California, USA., Sundaramurthi JC; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Thompson LR; Northern Gulf Institute, Mississippi State University, Mississippi State, Mississippi, USA.; Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, Miami, Florida, USA., Timme RE; US Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland, USA., Zheng J; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA., Wood-Charlson EM; Lawrence Berkeley National Laboratory, Berkeley, California, USA., Eloe-Fadrosh EA; Lawrence Berkeley National Laboratory, Berkeley, California, USA eaeloefadrosh@lbl.gov.
Jazyk: angličtina
Zdroj: MSystems [mSystems] 2021 Feb 23; Vol. 6 (1). Date of Electronic Publication: 2021 Feb 23.
DOI: 10.1128/mSystems.01194-20
Abstrakt: Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop.
Databáze: MEDLINE