Factors Influencing Genomic Prediction Accuracies of Tropical Maize Resistance to Fall Armyworm and Weevils.

Autor: Badji A; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Machida L; Alliance Bioversity-CIAT, Africa-Office, Kampala P.O. Box 24384, Uganda., Kwemoi DB; National Crops Resource Research Institute, Kampala P.O. Box 7084, Uganda., Kumi F; Department of Crop Science, University of Cape Coast, Cape Coast PMB, Ghana., Okii D; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Mwila N; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Agbahoungba S; Laboratory of Applied Ecology, University of Abomey-Calavi, Cotonou 01BP 526, Benin., Ibanda A; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Bararyenya A; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Nghituwamhata SN; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Odong T; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Wasswa P; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Otim M; National Crops Resource Research Institute, Kampala P.O. Box 7084, Uganda., Ochwo-Ssemakula M; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Talwana H; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Asea G; National Crops Resource Research Institute, Kampala P.O. Box 7084, Uganda., Kyamanywa S; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda., Rubaihayo P; Department of Agricultural Production, Makerere University, Kampala P.O. Box 7062, Uganda.
Jazyk: angličtina
Zdroj: Plants (Basel, Switzerland) [Plants (Basel)] 2020 Dec 24; Vol. 10 (1). Date of Electronic Publication: 2020 Dec 24.
DOI: 10.3390/plants10010029
Abstrakt: Genomic selection (GS) can accelerate variety improvement when training set (TS) size and its relationship with the breeding set (BS) are optimized for prediction accuracies (PAs) of genomic prediction (GP) models. Sixteen GP algorithms were run on phenotypic best linear unbiased predictors (BLUPs) and estimators (BLUEs) of resistance to both fall armyworm (FAW) and maize weevil (MW) in a tropical maize panel. For MW resistance, 37% of the panel was the TS, and the BS was the remainder, whilst for FAW, random-based training sets (RBTS) and pedigree-based training sets (PBTSs) were designed. PAs achieved with BLUPs varied from 0.66 to 0.82 for MW-resistance traits, and for FAW resistance, 0.694 to 0.714 for RBTS of 37%, and 0.843 to 0.844 for RBTS of 85%, and these were at least two-fold those from BLUEs. For PBTS, FAW resistance PAs were generally higher than those for RBTS, except for one dataset. GP models generally showed similar PAs across individual traits whilst the TS designation was determinant, since a positive correlation (R = 0.92***) between TS size and PAs was observed for RBTS, and for the PBTS, it was negative (R = 0.44**). This study pioneered the use of GS for maize resistance to insect pests in sub-Saharan Africa.
Databáze: MEDLINE