Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES.

Autor: Selbmann L; Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy.; Section of Mycology, Italian National Antarctic Museum (MNA), 16121 Genoa, Italy., Benkő Z; Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary., Coleine C; Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy., de Hoog S; Center of Expertise in Mycology of Radboud University Medical Center, Canisius Wilhelmina Hospital, 6532 Nijmegen, The Netherlands., Donati C; Fondazione Edmund Mach, 38010 San Michele all'Adige, Italy., Druzhinina I; The Key Laboratory of Plant Immunity, Nanjing Agricultural University, Nanjing 210095, China., Emri T; Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary., Ettinger CL; Genome Center, University of California, Davis, CA 95616, USA.; Microbiology & Plant Pathology, University of California Riverside, Riverside, CA 92521, USA., Gladfelter AS; Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514, USA., Gorbushina AA; Department of Materials and Environment, Bundesanstalt für Materialforschung und -prüfung (BAM), 10115 Berlin, Germany.; Department of Earth Sciences & Department of Biology, Chemistry, Pharmacy, Freie Universität, Berlin 10115 Berlin, Germany., Grigoriev IV; Lawrence Berkeley National Laboratory, US Department of Energy Joint Genome Institute, Berkeley, CA 94720, USA.; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA., Grube M; Institute of Biology, University of Graz, Graz A-8010, Austria., Gunde-Cimerman N; Department Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia., Karányi ZÁ; Department of Medicine, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary., Kocsis B; Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary., Kubressoian T; Microbiology & Plant Pathology, University of California Riverside, Riverside, CA 92521, USA., Miklós I; Department of Genetics and Applied Microbiology, Institute of Biotechnology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary., Miskei M; Department of Biochemistry and Molecular Biology, Faculty of Medicine University of Debrecen, 4032 Debrecen, Hungary., Muggia L; Department of Life Sciences, University of Trieste, 34121 Trieste, Italy., Northen T; Lawrence Berkeley National Laboratory, US Department of Energy Joint Genome Institute, Berkeley, CA 94720, USA., Novak-Babič M; Department Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia., Pennacchio C; Lawrence Berkeley National Laboratory, US Department of Energy Joint Genome Institute, Berkeley, CA 94720, USA., Pfliegler WP; Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary., Pòcsi I; Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary., Prigione V; Mycotheca Universitatis Taurinensis, University of Torino, 10125 Torino, Italy., Riquelme M; Department of Microbiology, Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE), Baja California 22980, Mexico., Segata N; Department CIBIO, University of Trento, 38123 Trento, Italy., Schumacher J; Department of Materials and Environment, Bundesanstalt für Materialforschung und -prüfung (BAM), 10115 Berlin, Germany., Shelest E; Centre for Enzyme Innovation, University of Portsmouth, Portsmouth PO1 2UP, UK., Sterflinger K; Institute of Natural Sciences and Technology in the Arts, Academy of Fine Arts Vienna, Vienna 22180, Austria., Tesei D; Department of Biotechnology, University of Natural Resources and Life Sciences, Vienna 22180, Austria., U'Ren JM; Department of Biosystems Engineering and BIO5 Institute, University of Arizona, Tucson, AZ 85721, USA., Varese GC; Mycotheca Universitatis Taurinensis, University of Torino, 10125 Torino, Italy., Vázquez-Campos X; School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney 2006, Australia., Vicente VA; Department of Biochemistry, Federal University of Paraná, Paraná E3100, Brazil., Souza EM; Department of Biochemistry, Federal University of Paraná, Paraná E3100, Brazil., Zalar P; Department Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia., Walker AK; Department of Biology, Acadia University, Wolfville, NS B4P 2R6, Canada., Stajich JE; Microbiology & Plant Pathology, University of California Riverside, Riverside, CA 92521, USA.
Jazyk: angličtina
Zdroj: Life (Basel, Switzerland) [Life (Basel)] 2020 Dec 19; Vol. 10 (12). Date of Electronic Publication: 2020 Dec 19.
DOI: 10.3390/life10120362
Abstrakt: The polyphyletic group of black fungi within the Ascomycota (Arthoniomycetes, Dothideomycetes, and Eurotiomycetes) is ubiquitous in natural and anthropogenic habitats. Partly because of their dark, melanin-based pigmentation, black fungi are resistant to stresses including UV- and ionizing-radiation, heat and desiccation, toxic metals, and organic pollutants. Consequently, they are amongst the most stunning extremophiles and poly-extreme-tolerant organisms on Earth. Even though ca. 60 black fungal genomes have been sequenced to date, [mostly in the family Herpotrichiellaceae (Eurotiomycetes)], the class Dothideomycetes that hosts the largest majority of extremophiles has only been sparsely sampled. By sequencing up to 92 species that will become reference genomes, the "Shed light in The daRk lineagES of the fungal tree of life" (STRES) project will cover a broad collection of black fungal diversity spread throughout the Fungal Tree of Life. Interestingly, the STRES project will focus on mostly unsampled genera that display different ecologies and life-styles (e.g., ant- and lichen-associated fungi, rock-inhabiting fungi, etc.). With a resequencing strategy of 10- to 15-fold depth coverage of up to ~550 strains, numerous new reference genomes will be established. To identify metabolites and functional processes, these new genomic resources will be enriched with metabolomics analyses coupled with transcriptomics experiments on selected species under various stress conditions (salinity, dryness, UV radiation, oligotrophy). The data acquired will serve as a reference and foundation for establishing an encyclopedic database for fungal metagenomics as well as the biology, evolution, and ecology of the fungi in extreme environments.
Databáze: MEDLINE
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