Menoci: lightweight extensible web portal enhancing data management for biomedical research projects.

Autor:	Suhr M; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany. markus.suhr@med.uni-goettingen.de., Lehmann C; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Bauer CR; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Bender T; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Knopp C; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Freckmann L; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Öst Hansen B; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Henke C; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Aschenbrandt G; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Kühlborn LK; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Rheinländer S; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Weber L; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Marzec B; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Hellkamp M; GWDG, Gesellschaft für Wissenschaftliche Datenverarbeitung mbH Göttingen, Am Faßberg 11, 37077, Göttingen, Germany., Wieder P; GWDG, Gesellschaft für Wissenschaftliche Datenverarbeitung mbH Göttingen, Am Faßberg 11, 37077, Göttingen, Germany., Sax U; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany., Kusch H; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.; Department of Molecular Biology, University Medical Center Göttingen, Humboldtallee 23, 37075, Göttingen, Germany., Nussbeck SY; Department of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.; University Medical Center Göttingen, UMG Biobank, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
Jazyk:	angličtina
Zdroj:	BMC bioinformatics [BMC Bioinformatics] 2020 Dec 17; Vol. 21 (1), pp. 582. Date of Electronic Publication: 2020 Dec 17.
DOI:	10.1186/s12859-020-03928-1
Abstrakt:	Background: Biomedical research projects deal with data management requirements from multiple sources like funding agencies' guidelines, publisher policies, discipline best practices, and their own users' needs. We describe functional and quality requirements based on many years of experience implementing data management for the CRC 1002 and CRC 1190. A fully equipped data management software should improve documentation of experiments and materials, enable data storage and sharing according to the FAIR Guiding Principles while maximizing usability, information security, as well as software sustainability and reusability. Results: We introduce the modular web portal software menoci for data collection, experiment documentation, data publication, sharing, and preservation in biomedical research projects. Menoci modules are based on the Drupal content management system which enables lightweight deployment and setup, and creates the possibility to combine research data management with a customisable project home page or collaboration platform. Conclusions: Management of research data and digital research artefacts is transforming from individual researcher or groups best practices towards project- or organisation-wide service infrastructures. To enable and support this structural transformation process, a vital ecosystem of open source software tools is needed. Menoci is a contribution to this ecosystem of research data management tools that is specifically designed to support biomedical research projects.
Databáze:	MEDLINE
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