Barapost: Binning of Nucleotide Sequences According to Taxonomic Annotation.

Autor: Sikolenko MA, Valentovich LN
Jazyk: angličtina
Zdroj: IEEE/ACM transactions on computational biology and bioinformatics [IEEE/ACM Trans Comput Biol Bioinform] 2021 Nov-Dec; Vol. 18 (6), pp. 2766-2767. Date of Electronic Publication: 2021 Dec 08.
DOI: 10.1109/TCBB.2020.3009780
Abstrakt: Contemporary sequencing technologies, Oxford Nanopore in particular, provide a way to sequence multiple samples during single run using molecular barcodes. Specific circumstances, however, can make barcoding undesirable or unaffordable. Here, we introduce Barapost: a command-line toolkit that demultiplexes long nucleotide sequences relying on taxonomic annotation instead of barcoding.
Databáze: MEDLINE