Single-cell RNA sequencing reveals that lung mesenchymal progenitor cells in IPF exhibit pathological features early in their differentiation trajectory.

Autor: Beisang DJ; University of Minnesota, Department of Pediatrics, Division of Pediatric Pulmonology, Minneapolis, USA., Smith K; University of Minnesota, Department of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, Minneapolis, USA., Yang L; University of Minnesota, Department of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, Minneapolis, USA., Benyumov A; University of Minnesota, Department of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, Minneapolis, USA., Gilbertsen A; University of Minnesota, Department of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, Minneapolis, USA., Herrera J; University of Manchester, School of Biological Sciences, Division of Cell Matrix Biology & Regenerative Medicine, Manchester, United Kingdom., Lock E; University of Minnesota, School of Public Health, Division of Biostatistics, Minneapolis, USA., Racila E; University of Minnesota, Department of Laboratory Medicine and Pathology, Minneapolis, USA., Forster C; University of Minnesota, Clinical and Translational Science Institute, Minneapolis, USA., Sandri BJ; University of Minnesota, Department of Pediatrics, Division of Neonatology, Minneapolis, USA., Henke CA; University of Minnesota, Department of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, Minneapolis, USA., Bitterman PB; University of Minnesota, Department of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, Minneapolis, USA. Bitte001@umn.edu.
Jazyk: angličtina
Zdroj: Scientific reports [Sci Rep] 2020 Jul 07; Vol. 10 (1), pp. 11162. Date of Electronic Publication: 2020 Jul 07.
DOI: 10.1038/s41598-020-66630-5
Abstrakt: In Idiopathic Pulmonary Fibrosis (IPF), there is unrelenting scarring of the lung mediated by pathological mesenchymal progenitor cells (MPCs) that manifest autonomous fibrogenicity in xenograft models. To determine where along their differentiation trajectory IPF MPCs acquire fibrogenic properties, we analyzed the transcriptome of 335 MPCs isolated from the lungs of 3 control and 3 IPF patients at the single-cell level. Using transcriptional entropy as a metric for differentiated state, we found that the least differentiated IPF MPCs displayed the largest differences in their transcriptional profile compared to control MPCs. To validate entropy as a surrogate for differentiated state functionally, we identified increased CD44 as a characteristic of the most entropic IPF MPCs. Using FACS to stratify IPF MPCs based on CD44 expression, we determined that CD44 hi IPF MPCs manifested an increased capacity for anchorage-independent colony formation compared to CD44 lo IPF MPCs. To validate our analysis morphologically, we used two differentially expressed genes distinguishing IPF MPCs from control (CD44, cell surface; and MARCKS, intracellular). In IPF lung tissue, pathological MPCs resided in the highly cellular perimeter region of the fibroblastic focus. Our data support the concept that IPF fibroblasts acquire a cell-autonomous pathological phenotype early in their differentiation trajectory.
Databáze: MEDLINE
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