863 genomes reveal the origin and domestication of chicken.

Autor: Wang MS; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China.; Department of Ecology and Evolutionary Biology, Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Thakur M; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Zoological Survey of India, New Alipore, Kolkata, West Bengal, India., Peng MS; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China., Jiang Y; Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China., Frantz LAF; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; The Palaeogenomics and Bio-Archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, UK.; School of Biological and Chemical Sciences, Queen Mary University of London, London, UK., Li M; Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China., Zhang JJ; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Wang S; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Peters J; ArchaeoBioCenter and Department of Veterinary Sciences, Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, LMU Munich, Munich, Germany.; SNSB, Bavarian State Collection of Anthropology and Palaeoanatomy, Munich, Germany., Otecko NO; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Suwannapoom C; School of Agriculture and Natural Resources, University of Phayao, Phayao, Thailand., Guo X; College of Animal Science and Technology, Anhui Agricultural University, Hefei, Anhui, China., Zheng ZQ; Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China., Esmailizadeh A; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Department of Animal Science, Shahid Bahonar University of Kerman, Kerman, Iran., Hirimuthugoda NY; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Faculty of Agriculture, University of Ruhuna, Matara, Sri Lanka., Ashari H; Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Science (LIPI), Cibinong, Indonesia.; CAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources, Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing, China., Suladari S; Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Science (LIPI), Cibinong, Indonesia., Zein MSA; Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Science (LIPI), Cibinong, Indonesia., Kusza S; Institute of Animal Husbandry, Biotechnology and Nature Conservation, University of Debrecen, Debrecen, Hungary., Sohrabi S; Department of Animal Science, Shahid Bahonar University of Kerman, Kerman, Iran., Kharrati-Koopaee H; Department of Animal Science, Shahid Bahonar University of Kerman, Kerman, Iran.; Institute of Biotechnology, School of Agriculture, Shiraz University, Shiraz, Iran., Shen QK; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Zeng L; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Yang MM; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Wu YJ; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; State Key Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, Kunming, Yunnan, China., Yang XY; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; State Key Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, Kunming, Yunnan, China., Lu XM; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China., Jia XZ; Livestock Genetics Program, International Livestock Research Institute (ILRI), Nairobi, Kenya.; Department of Animal Science, Iowa State University, Ames, IA, USA., Nie QH; College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China., Lamont SJ; Department of Animal Science, Iowa State University, Ames, IA, USA., Lasagna E; Dipartimento di Scienze Agrarie, Alimentarie Ambientali, University of Perugia, Perugia, Italy., Ceccobelli S; Dipartimento di Scienze Agrarie, Alimentarie Ambientali, University of Perugia, Perugia, Italy., Gunwardana HGTN; Faculty of Agriculture, University of Ruhuna, Matara, Sri Lanka., Senasige TM; Faculty of Agriculture, University of Ruhuna, Matara, Sri Lanka., Feng SH; BGI-Shenzhen, Beishan Industrial Zone, Shenzhen, Guangdong, China., Si JF; Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture of China, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China., Zhang H; Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture of China, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China., Jin JQ; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences (CAS-SEABRI), Yezin, Myanmar., Li ML; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Liu YH; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Chen HM; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Ma C; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Dai SS; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China., Bhuiyan AKFH; Bangladesh Agricultural University, Mymennsingh, Bangladesh., Khan MS; University of Agriculture Faisalabad, Faisalabad, Pakistan., Silva GLLP; Department of Animal Science, University of Peradeniya, Peradeniya, Sri Lanka., Le TT; National Institute of Animal Husbandry, Hanoi, Vietnam., Mwai OA; Livestock Genetics Program, International Livestock Research Institute (ILRI), Nairobi, Kenya., Ibrahim MNM; Livestock Genetics Program, International Livestock Research Institute (ILRI), Nairobi, Kenya., Supple M; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA, USA., Shapiro B; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA, USA.; Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Hanotte O; Cells, Organisms and Molecular Genetics, School of Life Sciences, University of Nottingham, Nottingham, UK.; Livestock Genetics Program, International Livestock Research Institute (ILRI), Addis Ababa, Ethiopia., Zhang G; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China.; Department of Biology, Centre for Social Evolution, University of Copenhagen, Copenhagen, Denmark.; China National Genebank, BGI-Shenzhen, Shenzhen, Guangdong, China., Larson G; The Palaeogenomics and Bio-Archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, UK., Han JL; CAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources, Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing, China. h.jianlin@cgiar.org.; Livestock Genetics Program, International Livestock Research Institute (ILRI), Nairobi, Kenya. h.jianlin@cgiar.org., Wu DD; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China. wudongdong@mail.kiz.ac.cn.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China. wudongdong@mail.kiz.ac.cn.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China. wudongdong@mail.kiz.ac.cn., Zhang YP; State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China. zhangyp@mail.kiz.ac.cn.; Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China. zhangyp@mail.kiz.ac.cn.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan, China. zhangyp@mail.kiz.ac.cn.; State Key Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, Kunming, Yunnan, China. zhangyp@mail.kiz.ac.cn.
Jazyk: angličtina
Zdroj: Cell research [Cell Res] 2020 Aug; Vol. 30 (8), pp. 693-701. Date of Electronic Publication: 2020 Jun 25.
DOI: 10.1038/s41422-020-0349-y
Abstrakt: Despite the substantial role that chickens have played in human societies across the world, both the geographic and temporal origins of their domestication remain controversial. To address this issue, we analyzed 863 genomes from a worldwide sampling of chickens and representatives of all four species of wild jungle fowl and each of the five subspecies of red jungle fowl (RJF). Our study suggests that domestic chickens were initially derived from the RJF subspecies Gallus gallus spadiceus whose present-day distribution is predominantly in southwestern China, northern Thailand and Myanmar. Following their domestication, chickens were translocated across Southeast and South Asia where they interbred locally with both RJF subspecies and other jungle fowl species. In addition, our results show that the White Leghorn chicken breed possesses a mosaic of divergent ancestries inherited from other subspecies of RJF. Despite the strong episodic gene flow from geographically divergent lineages of jungle fowls, our analyses show that domestic chickens undergo genetic adaptations that underlie their unique behavioral, morphological and reproductive traits. Our study provides novel insights into the evolutionary history of domestic chickens and a valuable resource to facilitate ongoing genetic and functional investigations of the world's most numerous domestic animal.
Databáze: MEDLINE