Three-gene PCR and high-resolution melting analysis for differentiating vertebrate species mitochondrial DNA for biodiversity research and complementing forensic surveillance.

Autor: Ouso DO; International Centre of Insect Physiology and Ecology (icipe), P.O. Box 30772-00100, Nairobi, Kenya.; Biochemistry Department, Jomo Kenyatta University of Agriculture and Technology (JKUAT), P.O. Box 62000-00200, Nairobi, Kenya., Otiende MY; Kenya Wildlife Service, Veterinary Department, P.O. Box 40241-00100, Nairobi, Kenya., Jeneby MM; Institute of Primate Research, National Museums of Kenya, Department of Tropical and Infectious Diseases, P. O. Box 24481-00502, Karen, Nairobi, Kenya., Oundo JW; International Centre of Insect Physiology and Ecology (icipe), P.O. Box 30772-00100, Nairobi, Kenya., Bargul JL; International Centre of Insect Physiology and Ecology (icipe), P.O. Box 30772-00100, Nairobi, Kenya.; Biochemistry Department, Jomo Kenyatta University of Agriculture and Technology (JKUAT), P.O. Box 62000-00200, Nairobi, Kenya., Miller SE; National Museum of Natural History, Smithsonian Institution, Washington, DC, USA., Wambua L; International Centre of Insect Physiology and Ecology (icipe), P.O. Box 30772-00100, Nairobi, Kenya.; International Livestock Research Institute, Department of Animal Biosciences, P.O. Box 30709-00100, Nairobi, Kenya., Villinger J; International Centre of Insect Physiology and Ecology (icipe), P.O. Box 30772-00100, Nairobi, Kenya. jandouwe@icipe.org.
Jazyk: angličtina
Zdroj: Scientific reports [Sci Rep] 2020 Mar 16; Vol. 10 (1), pp. 4741. Date of Electronic Publication: 2020 Mar 16.
DOI: 10.1038/s41598-020-61600-3
Abstrakt: Reliable molecular identification of vertebrate species from morphologically unidentifiable tissue is critical for the prosecution of illegally-traded wildlife products, conservation-based biodiversity research, and identification of blood-meal hosts of hematophagous invertebrates. However, forensic identification of vertebrate tissue relies on sequencing of the mitochondrial cytochrome oxidase I (COI) 'barcode' gene, which remains costly for purposes of screening large numbers of unknown samples during routine surveillance. Here, we adapted a rapid, low-cost approach to differentiate 10 domestic and 24 wildlife species that are common in the East African illegal wildlife products trade based on their unique high-resolution melting profiles from COI, cytochrome b, and 16S ribosomal RNA gene PCR products. Using the approach, we identified (i) giraffe among covertly sampled meat from Kenyan butcheries, and (ii) forest elephant mitochondrial sequences among savannah elephant reference samples. This approach is being adopted for high-throughput pre-screening of potential bushmeat samples in East African forensic science pipelines.
Databáze: MEDLINE
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