A jumbo phage that forms a nucleus-like structure evades CRISPR-Cas DNA targeting but is vulnerable to type III RNA-based immunity.

Autor: Malone LM; Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand., Warring SL; Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand., Jackson SA; Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.; Genetics Otago, University of Otago, Dunedin, New Zealand., Warnecke C; Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland., Gardner PP; Genetics Otago, University of Otago, Dunedin, New Zealand.; Department of Biochemistry, University of Otago, Dunedin, New Zealand., Gumy LF; Department of Anatomy, University of Otago, Dunedin, New Zealand., Fineran PC; Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand. peter.fineran@otago.ac.nz.; Genetics Otago, University of Otago, Dunedin, New Zealand. peter.fineran@otago.ac.nz.
Jazyk: angličtina
Zdroj: Nature microbiology [Nat Microbiol] 2020 Jan; Vol. 5 (1), pp. 48-55. Date of Electronic Publication: 2019 Dec 09.
DOI: 10.1038/s41564-019-0612-5
Abstrakt: CRISPR-Cas systems provide bacteria with adaptive immunity against bacteriophages 1 . However, DNA modification 2,3 , the production of anti-CRISPR proteins 4,5 and potentially other strategies enable phages to evade CRISPR-Cas. Here, we discovered a Serratia jumbo phage that evades type I CRISPR-Cas systems, but is sensitive to type III immunity. Jumbo phage infection resulted in a nucleus-like structure enclosed by a proteinaceous phage shell-a phenomenon only reported recently for distantly related Pseudomonas phages 6,7 . All three native CRISPR-Cas complexes in Serratia-type I-E, I-F and III-A-were spatially excluded from the phage nucleus and phage DNA was not targeted. However, the type III-A system still arrested jumbo phage infection by targeting phage RNA in the cytoplasm in a process requiring Cas7, Cas10 and an accessory nuclease. Type III, but not type I, systems frequently targeted nucleus-forming jumbo phages that were identified in global viral sequence datasets. The ability to recognize jumbo phage RNA and elicit immunity probably contributes to the presence of both RNA- and DNA-targeting CRISPR-Cas systems in many bacteria 1,8 . Together, our results support the model that jumbo phage nucleus-like compartments serve as a barrier to DNA-targeting, but not RNA-targeting, defences, and that this phenomenon is widespread among jumbo phages.
Databáze: MEDLINE